Visualizing plant metabolomic correlation networks using clique-metabolite matrices. - Frank Kose; Wolfram Weckwerth; Thomas Linke; Oliver Fiehn (Bioinform., 2001)

Observing and Interpreting Correlations in Metabolic Networks. - Ralph E. Steuer; Jürgen Kurths; Oliver Fiehn; Wolfram Weckwerth (Bioinform., 2003)

GMD@CSB.DB: the Golm Metabolome Database. - Joachim Kopka; Nicolas Schauer; Stephan Krueger; Claudia Birkemeyer; Björn Usadel; Eveline Bergmüller; Peter Dörmann; Wolfram Weckwerth; Yves Gibon; Mark Stitt; Lothar Willmitzer; Alisdair R. Fernie; et al. (Bioinform., 2005)

Species-specific analysis of protein sequence motifs using mutual information. - Jan Hummel; Nima Keshvari; Wolfram Weckwerth; Joachim Selbig (BMC Bioinform., 2005)

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. - Jan Hummel; Michaela Niemann; Stefanie Wienkoop; Waltraud X. Schulze; Dirk Steinhauser; Joachim Selbig; Dirk Walther 001; Wolfram Weckwerth (BMC Bioinform., 2007)

Consistency analysis of metabolic correlation networks. - Mark Müller-Linow; Wolfram Weckwerth; Marc-Thorsten Hütt (BMC Syst. Biol., 2007)

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. - Joshua L. Heazlewood; Pawel Durek; Jan Hummel; Joachim Selbig; Wolfram Weckwerth; Dirk Walther 001; Waltraud X. Schulze (Nucleic Acids Res., 2008)

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. - Pawel Durek; Christian Schudoma; Wolfram Weckwerth; Joachim Selbig; Dirk Walther 001 (BMC Bioinform., 2009)

Toward a Unification of System-Theoretical Principles in Biology and Ecology - The Stochastic Lyapunov Matrix Equation and Its Inverse Application. - Wolfram Weckwerth (Frontiers Appl. Math. Stat., 2019)

An Innovative Perspective on Metabolomics Data Analysis in Biomedical Research Using Concept Drift Detection. - Jana Schwarzerova; Adam Bajger; Iro Pierdou; Lubos Popelínský; Karel Sedlár; Wolfram Weckwerth (BIBM, 2021)

Systems biology approach for analysis of mobile genetic elements in chicken gut microbiome. - Jana Schwarzerova; Michal Zeman; Ivan Rychlik; Wolfram Weckwerth; Ivo Provazník; Monika Dolejská; Darina Cejková (BIBM, 2022)

A Revealed Imperfection in Concept Drift Correction in Metabolomics Modeling. - Jana Schwarzerova; Ales Kostoval; Adam Bajger; Lucia Jakubikova; Iro Pierides; Lubos Popelínský; Karel Sedlár; Wolfram Weckwerth (ITIB, 2022)

Linear Predictive Modeling for Immune Metabolites Related to Other Metabolites. - Jana Schwarzerova; Iro Pierides; Karel Sedlár; Wolfram Weckwerth (IWBBIO (1), 2022)

Utilizing Genetic Programming to Enhance Polygenic Risk Score Calculation. - Martin Hurta; Jana Schwarzerova; Thomas Nägele; Wolfram Weckwerth; Valentine Provazník; Lukás Sekanina (BIBM, 2023)

Systematic Comparison of Advanced Network Analysis and Visualization of Lipidomics Data. - Jana Schwarzerova; Dominika Olesová; Ales Kvasnicka; David Friedecký; Margaret Varga; Valentine Provazník; Wolfram Weckwerth (IWBBIO (1), 2023)

Polygenic Risk Score Simulation: A case study of sudden cardiovascular diseases derived from literature insights. - Jana Schwarzerova; Lenka Piherova; Petra Polakovicova; Simona Guziurova; Eva Kutilova; Martina Adamova; Alice Krebsova; Valentine Provazník; Wolfram Weckwerth; Radka Sitkova (BIBM, 2024)

Visualizing Horizontal Gene Transfer Detection in Phylogenetically Divergent Bacteria. - Jana Schwarzerova; Laxmipriya Rajasekaran; Katerina Jureckova; Julie Nejezchlebova; Margaret Varga; Valentine Provazník; Wolfram Weckwerth; Darina Cejková (IWBBIO (2), 2024)

A perspective on genetic and polygenic risk scores - advances and limitations and overview of associated tools. - Jana Schwarzerova; Martin Hurta; Vojtech Barton; Matej Lexa; Dirk Walther 001; Valentine Provazník; Wolfram Weckwerth (Briefings Bioinform., 2024)

MInfer: Bridging MetaboAnalyst and Jacobian analysis for metabolomic networks. - Jana Schwarzerova; Erdo Gabor Mate; Jakub Idkowiak; Dominika Olesová; Ales Kvasnicka; Dana Dobesova; David Friedecký; Valentyna Provaznik; Jozef Skarda; Wolfram Weckwerth; Thomas Nägele (Comput. Methods Programs Biomed., 2025)