Efficient Modularization of Weighted Protein Interaction Networks using k-Hop Graph Reduction. - Young-Rae Cho; Woochang Hwang; Aidong Zhang (BIBE, 2006)

Identification of Overlapping Functional Modules in Protein Interaction Networks: Information Flow-based Approach. - Young-Rae Cho; Woochang Hwang; Aidong Zhang (ICDM Workshops, 2006)

A novel functional module detection algorithm for protein-protein interaction networks. - Woochang Hwang; Young-Rae Cho; Aidong Zhang; Murali Ramanathan (Algorithms Mol. Biol., 2006)

Optimizing Flow-based Modularization by Iterative Centroid Search in Protein Interaction Networks. - Young-Rae Cho; Woochang Hwang; Aidong Zhang (BIBE, 2007)

SIGN: reliable protein interaction identification by integrating the Similarity In GO and the similarity in protein interaction Networks. - Woochang Hwang; Taehyong Kim; Young-Rae Cho; Aidong Zhang; Murali Ramanathan (BIBE, 2007)

Modularization of Protein Interaction Networks by Incorporating Gene Ontology Annotations. - Young-Rae Cho; Woochang Hwang; Aidong Zhang (CIBCB, 2007)

Assessing Reliability of Protein-Protein Interactions by Semantic Data Integration. - Young-Rae Cho; Woochang Hwang; Aidong Zhang (ICDM Workshops, 2007)

Feature Extraction from Microarray Expression Data by Integration of Semantic Knowledge. - Young-Rae Cho; Xian Xu 002; Woochang Hwang; Aidong Zhang (ICMLA, 2007)

Semantic integration to identify overlapping functional modules in protein interaction networks. - Young-Rae Cho; Woochang Hwang; Murali Ramanathan; Aidong Zhang (BMC Bioinform., 2007)

Multi-agent Model Analysis of the Containment Strategy for Avian Influenza (AI) in South Korea. - Taehyong Kim; Woochang Hwang; Aidong Zhang; Surajit Sen; Murali Ramanathan (BIBM, 2008)

Bridging centrality: graph mining from element level to group level. - Woochang Hwang; Taehyong Kim; Murali Ramanathan; Aidong Zhang (KDD, 2008)

CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions. - Woochang Hwang; Young-Rae Cho; Aidong Zhang; Murali Ramanathan (BMC Bioinform., 2008)

Computational Framework for Microstructural Bone Dynamics Model and Its Evaluation. - Taehyong Kim; Woochang Hwang; Aidong Zhang; Murali Ramanathan (BIBE, 2010)

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data. - Chao Cheng; Koon-Kiu Yan; Woochang Hwang; Jiang Qian; Nitin Bhardwaj; Joel S. Rozowsky; Zhi John Lu; Wei Niu; Pedro Alves; Masaomi Kato; Michael Snyder 001; Mark Gerstein (PLoS Comput. Biol., 2011)

Rule-based whole body modeling for analyzing multi-compound effects. - Woochang Hwang; Yongdeuk Hwang; Sunjae Lee; Doheon Lee (DTMBIO@CIKM, 2012)

BSML: bio-synergy modeling language for multi-component and multi-target analysis. - Woochang Hwang; Jaejoon Choi; Jinmyung Jung; Doheon Lee (DTMBIO, 2013)

Rule-based multi-scale simulation for drug effect pathway analysis. - Woochang Hwang; Yongdeuk Hwang; Sunjae Lee; Doheon Lee (BMC Medical Informatics Decis. Mak., 2013)

Cell line specific method based on functional modules for drug sensitivity prediction. - Woochang Hwang; Jaejoon Choi; Mijin Kwon; Doheon Lee (DTMBIO@CIKM, 2015)

Context-specific functional module based drug efficacy prediction. - Woochang Hwang; Jaejoon Choi; Mijin Kwon; Doheon Lee (BMC Bioinform., 2016)

Concept embedding to measure semantic relatedness for biomedical information ontologies. - Junseok Park; Kwangmin Kim; Woochang Hwang; Doheon Lee (J. Biomed. Informatics, 2019)

Identification and validation of Triamcinolone and Gallopamil as treatments for early COVID-19 via an in silico repurposing pipeline. - Méabh MacMahon; Woochang Hwang; Soorin Yim; Eoghan MacMahon; Alexandre Abraham; Justin Barton; Mukunthan Tharmakulasingam; Paul Bilokon; Vasanthi Priyadarshini Gaddi; Namshik Han (CoRR, 2021)