PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy. - Woonghee Lee 003; William M. Westler; Arash Bahrami; Hamid Eghbalnia; John L. Markley (Bioinform., 2009)

PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination. - Woonghee Lee 003; Jin Hae Kim; William M. Westler; John L. Markley (Bioinform., 2011)

PACSY database, a relational database management system for Protein structure and nuclear Magnetic Resonance chemical shift analysis. - Woonghee Lee 003; John L. Markley (BIBM Workshops, 2012)

ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy. - Woonghee Lee 003; Arash Bahrami; John L. Markley (Bioinform., 2013)

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. - Woonghee Lee 003; Marco Tonelli; John L. Markley (Bioinform., 2015)

PINE-SPARKY.2 for automated NMR-based protein structure research. - Woonghee Lee 003; John L. Markley (Bioinform., 2018)

PISA-SPARKY: an interactive SPARKY plugin to analyze oriented solid-state NMR spectra of helical membrane proteins. - Daniel K. Weber; Songlin Wang; John L. Markley; Gianluigi Veglia; Woonghee Lee 003 (Bioinform., 2020)

POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules. - Woonghee Lee 003; Mehdi Rahimi; Yeongjoon Lee; Abigail Chiu (Bioinform., 2021)

CHESPA/CHESCA-SPARKY: automated NMR data analysis plugins for SPARKY to map protein allostery. - Hongzhao Shao; Stephen Boulton; Cristina Olivieri; Hebatallah Mohamed; Madoka Akimoto; Manu Veliparambil Subrahmanian; Gianluigi Veglia; John L. Markley; Giuseppe Melacini; Woonghee Lee 003 (Bioinform., 2021)