Isolating structural errors in reaction networks in systems biology. - Woosub Shin; Joseph L. Hellerstein (Bioinform., 2021)

Ten simple rules for creating reusable pathway models for computational analysis and visualization. - Kristina Hanspers; Martina Kutmon; Susan L. Coort; Daniela Digles; Lauren J. Dupuis; Friederike Ehrhart; Finterly Hu; Elisson N. Lopes; Marvin Martens; Nhung Pham; Woosub Shin; Denise N. Slenter; et al. (PLoS Comput. Biol., 2021)

An automated model annotation system (AMAS) for SBML models. - Woosub Shin; John H. Gennari; Joseph L. Hellerstein; Herbert M. Sauro (Bioinform., 2023)