Prediction of RNA secondary structure based on helical regions distribution. - Wuju Li; W. JiaJin (Bioinform., 1998)

Tclass: tumor classification system based on gene expression profile. - Wuju Li; Momiao Xiong (Bioinform., 2002)

SamCluster: An Integrated Scheme for Automatic Discovery of Sample Classes Using Gene Expression Profile. - Wuju Li; Ming Fan; Momiao Xiong (Bioinform., 2003)

RDfolder: a web server for prediction of RNA secondary structure. - Xiaomin Ying; Hong Luo; Jingchu Luo; Wuju Li (Nucleic Acids Res., 2004)

BioSunMS: a plug-in-based software for the management of patients information and the analysis of peptide profiles from mass spectrometry. - Yuan Cao; Na Wang; Xiaomin Ying; Ailing Li; Hengsha Wang; Xuemin Zhang; Wuju Li (BMC Medical Informatics Decis. Mak., 2009)

Predicting sRNAs and Their Targets in Bacteria. - Wuju Li; Xiaomin Ying; Qixuan Lu; Linxi Chen (Genom. Proteom. Bioinform., 2012)

Predicting linear B-cell epitopes using amino acid anchoring pair composition. - Weike Shen; Yuan Cao; Lei Cha; Xufei Zhang; Xiaomin Ying; Wei Zhang; Kun Ge; Wuju Li; Li Zhong (BioData Min., 2015)

sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria. - Jiang Wang; Tao Liu 007; Bo Zhao; Qixuan Lu; Zheng Wang; Yuan Cao; Wuju Li (Nucleic Acids Res., 2016)

Deep learning methods improve linear B-cell epitope prediction. - Tao Liu 007; Kaiwen Shi; Wuju Li (BioData Min., 2020)

Genome-wide analysis of lncRNA stability in human. - Kaiwen Shi; Tao Liu 007; Hanjiang Fu; Wuju Li; Xiaofei Zheng (PLoS Comput. Biol., 2021)