Phytest: quality control for phylogenetic analyses. - Wytamma Wirth; Simon J. Mutch; Robert Turnbull; Sebastián Duchêne (Bioinform., 2022)

Snk: A Snakemake CLI and Workflow Management System. - Wytamma Wirth; Simon J. Mutch; Robert Turnbull (J. Open Source Softw., 2024)

How does date-rounding affect phylodynamic inference for public health? - Leo A. Featherstone; Danielle J. Ingle; Wytamma Wirth; Sebastián Duchêne (PLoS Comput. Biol., 2025)