Estimation of motion boundary location and optical flow using dynamic programming. - Xenophon Papademetris; Peter N. Belhumeur (ICIP (1), 1996)

Recovery of Soft Tissue Object Deformation from 3D Image Sequences Using Biomechanical Models. - Xenophon Papademetris; Pengcheng Shi; Donald P. Dione; Albert J. Sinusas; R. Todd Constable; James S. Duncan (IPMI, 1999)

3D Cardiac Deformation from Ultrasound Images. - Xenophon Papademetris; Albert J. Sinusas; Donald P. Dione; James S. Duncan (MICCAI, 1999)

Estimating 3D Strain from 4D Cine-MRI and Echocardiography: In-Vivo Validation. - Xenophon Papademetris; Albert J. Sinusas; Donald P. Dione; R. Todd Constable; James S. Duncan (MICCAI, 2000)

The Active Elastic Model. - Xenophon Papademetris; E. Turan Onat; Albert J. Sinusas; Donald P. Dione; R. Todd Constable; James S. Duncan (IPMI, 2001)

Estimation of 3D left ventricular deformation from echocardiography. - Xenophon Papademetris; Albert J. Sinusas; Donald P. Dione; James S. Duncan (Medical Image Anal., 2001)

Estimation of 3D left ventricular deformation from medical images using biomechanical models. - Xenophon Papademetris; Albert J. Sinusas; Donald P. Dione; R. Todd Constable; James S. Duncan (IEEE Trans. Medical Imaging, 2002)

A New Biomechanical Model Based Approach on Brain Shift Compensation. - Keiji Kobashi; Xenophon Papademetris; James S. Duncan (MICCAI (1), 2003)

Analysis of Left Ventricular Motion Using a General Robust Point Matching Algorithm. - Ning Lin; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (MICCAI (1), 2003)

Computing 3D Non-rigid Brain Registration Using Extended Robust Point Matching for Composite Multisubject fMRI Analysis. - Xenophon Papademetris; Andrea P. Jackowski; Robert T. Schultz; Lawrence H. Staib; James S. Duncan (MICCAI (2), 2003)

Construction of a 3D Volumetric Probabilistic Model of the Mouse Kidney from MRI. - Hirohito Okuda; Pavel Shkarin; Kevin L. Behar; James S. Duncan; Xenophon Papademetris (MICCAI (2), 2004)

Integrated Intensity and Point-Feature Nonrigid Registration. - Xenophon Papademetris; Andrea P. Jackowski; Robert T. Schultz; Lawrence H. Staib; James S. Duncan (MICCAI (1), 2004)

Functional Brain Image Analysis Using Joint Function-Structure Priors. - Jing Yang 005; Xenophon Papademetris; Lawrence H. Staib; Robert T. Schultz; James S. Duncan (MICCAI (2), 2004)

Regional Whole Body Fat Quantification in Mice. - Xenophon Papademetris; Pavel Shkarin; Lawrence H. Staib; Kevin L. Behar (IPMI, 2005)

Characterizing Vascular Connectivity from microCT Images. - Marcel Jackowski; Xenophon Papademetris; Lawrence W. Dobrucki; Albert J. Sinusas; Lawrence H. Staib (MICCAI (2), 2005)

Articulated Rigid Registration for Serial Lower-Limb Mouse Imaging. - Xenophon Papademetris; Donald P. Dione; Lawrence W. Dobrucki; Lawrence H. Staib; Albert J. Sinusas (MICCAI (2), 2005)

Combined feature/intensity-based brain shift compensation using stereo guidance. - Christine DeLorenzo; Xenophon Papademetris; Kenneth P. Vives; Dennis D. Spencer; James S. Duncan (ISBI, 2006)

Development of a research interface for image guided intervention: initial application to epilepsy neurosurgery. - Xenophon Papademetris; Kenneth P. Vives; Marcello DiStasio; Lawrence H. Staib; Markus Neff; Sven Flossman; Nils Frielinghaus; Hitten Zaveri; Edward J. Novotny; Hal Blumenfeld; R. Todd Constable; Hoby P. Hetherington; et al. (ISBI, 2006)

Correlation of magnetic resonance spectroscopic imaging and intracranial EEG localization of seizures. 7. - Edward Scharff; Xenophon Papademetris; Hoby P. Hetherington; J. W. Pan; Hitten Zaveri; Hal Blumenfeld; Robert B. Duckrow; Susan S. Spencer; Dennis D. Spencer; James S. Duncan; Edward J. Novotny (ISBI, 2006)

Brain shape characterization from deformation. - Lawrence H. Staib; Marcel Jackowski; Xenophon Papademetris (ISBI, 2006)

Nonrigid 3D Brain Registration Using Intensity/Feature Information. - Christine DeLorenzo; Xenophon Papademetris; Kun Wu; Kenneth P. Vives; Dennis D. Spencer; James S. Duncan (MICCAI (1), 2006)

Spatial resolution, signal-to-noise ratio, and smoothing in multi-subject functional MRI studies. - A. Scouten; Xenophon Papademetris; R. Todd Constable (NeuroImage, 2006)

Local Shape Registration Using Boundary-Constrained Match of Skeletons. - Yun Zhu 001; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (CVPR, 2007)

Nonrigid Intraoperative Cortical Surface Tracking Using Game Theory. - Christine DeLorenzo; Xenophon Papademetris; Lawrence H. Staib; Kenneth P. Vives; Dennis D. Spencer; James S. Duncan (ICCV, 2007)

Level Set Based Clustering for Analysis of Functional Mri Data. - Deepti R. Bathula; Xenophon Papademetris; James S. Duncan (ISBI, 2007)

A Realistic Brain Phantom for 3d Deformation Recovery. - Christine DeLorenzo; Xenophon Papademetris; Kenneth P. Vives; Dennis D. Spencer; James S. Duncan (ISBI, 2007)

A Constrained Non-Rigid Registration Algorithm for Application in Prostate Radiotherapy. - William Harvey Greene; Sudhakar Chelikani; Xenophon Papademetris; Jonathan Knisely; James S. Duncan (ISBI, 2007)

Cardiac Mr Image Segmentation with Incompressibility Constraint. - Yun Zhu 001; Xenophon Papademetris; James S. Duncan; Albert J. Sinusas (ISBI, 2007)

A Comprehensive System for Intraoperative 3D Brain Deformation Recovery. - Christine DeLorenzo; Xenophon Papademetris; Kenneth P. Vives; Dennis D. Spencer; James S. Duncan (MICCAI (2), 2007)

Segmentation of Myocardial Volumes from Real-Time 3D Echocardiography Using an Incompressibility Constraint. - Yun Zhu 001; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (MICCAI (1), 2007)

Segmentation of left ventricle from 3D cardiac MR image sequences using a subject-specific dynamical model. - Yun Zhu 001; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (CVPR, 2008)

Integrated segmentation and motion analysis of cardiac MR images using a subject-specific dynamical model. - Yun Zhu 001; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (CVPR Workshops, 2008)

Tracking organ overlap for a constrained non-rigid registration algorithm. - William Harvey Greene; Sudhakar Chelikani; Xenophon Papademetris; Lawrence H. Staib; Jonathan Knisely; James S. Duncan (ISBI, 2008)

Integrated segmentation and deformation analysis of 4-D cardiac MR images. - Yun Zhu 001; Ping Yan; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (ISBI, 2008)

Bayesian Analysis of fMRI Data with ICA Based Spatial Prior. - Deepti R. Bathula; Hemant D. Tagare; Lawrence H. Staib; Xenophon Papademetris; Robert T. Schultz; James S. Duncan (MICCAI (2), 2008)

A Constrained Non-rigid Registration Algorithm for Use in Prostate Image-Guided Radiotherapy. - William Harvey Greene; Sudhakar Chelikani; Kailas Purushothaman; Zhe Chen 012; Jonathan Knisely; Lawrence H. Staib; Xenophon Papademetris; James S. Duncan (MICCAI (1), 2008)

Bidirectional Segmentation of Three-Dimensional Cardiac MR Images Using a Subject-Specific Dynamical Model. - Yun Zhu 001; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (MICCAI (2), 2008)

More accurate Talairach coordinates for neuroimaging using non-linear registration. - Cheryl Lacadie; Robert K. Fulbright; Nallakkandi Rajeevan; R. Todd Constable; Xenophon Papademetris (NeuroImage, 2008)

Effective visualization of complex vascular structures using a non-parametric vessel detection method. - Alark Joshi; Xiaoning Qian; Donald P. Dione; Ketan R. Bulsara; Christopher K. Breuer; Albert J. Sinusas; Xenophon Papademetris (IEEE Trans. Vis. Comput. Graph., 2008)

Novel interaction techniques forneurosurgical planning and stereotactic navigation. - Alark Joshi; Dustin Scheinost; Kenneth P. Vives; Dennis D. Spencer; Lawrence H. Staib; Xenophon Papademetris (IEEE Trans. Vis. Comput. Graph., 2008)

Shape comparison using perturbing shape registration. - Yifeng Jiang 001; Erin Edmiston; Fei Wang 003; Hilary P. Blumberg; Lawrence H. Staib; Xenophon Papademetris (CVPR, 2009)

Improving the Reliability of Shape Comparison by Perturbation. - Yifeng Jiang 001; Erin Edmiston; Fei Wang 003; Hilary P. Blumberg; Xenophon Papademetris; Lawrence H. Staib (ISBI, 2009)

An Improved Unbiased Method for Diffspect Quantification in Epilepsy. - Dustin Scheinost; Hal Blumenfeld; Xenophon Papademetris (ISBI, 2009)

Volumetric Shape Model for Oriented Tubular Structure from DTI Data. - Hon Pong Ho; Xenophon Papademetris; Fei Wang 003; Hilary P. Blumberg; Lawrence H. Staib (MICCAI (1), 2009)

A Non-rigid Registration Method for Serial microCT Mouse Hindlimb Images. - Jung W. Suh; Dustin Scheinost; Donald P. Dione; Lawrence W. Dobrucki; Albert J. Sinusas; Xenophon Papademetris (MICCAI (1), 2009)

A Dynamical Shape Prior for LV Segmentation from RT3D Echocardiography. - Yun Zhu 001; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (MICCAI (1), 2009)

Constrained non-rigid registration for use in image-guided adaptive radiotherapy. - William Harvey Greene; Sudhakar Chelikani; Kailas Purushothaman; J. P. S. Knisely; Zhe Chen 012; Xenophon Papademetris; Lawrence H. Staib; James S. Duncan (Medical Image Anal., 2009)

A non-parametric vessel detection method for complex vascular structures. - Xiaoning Qian; Matthew P. Brennan; Donald P. Dione; Wawrzyniec L. Dobrucki; Marcel Jackowski; Christopher K. Breuer; Albert J. Sinusas; Xenophon Papademetris (Medical Image Anal., 2009)

DTI abnormalities in anterior corpus callosum of rats with spike-wave epilepsy. - H. Chahboune; Asht M. Mishra; Matthew N. DeSalvo; Lawrence H. Staib; Michael J. Purcaro; Dustin Scheinost; Xenios Papademetris; S. J. Fyson; M. L. Lorincz; Vincenzo Crunelli; Fahmeed Hyder; Hal Blumenfeld (NeuroImage, 2009)

Vascular tree reconstruction by minimizing a physiological functional cost. - Yifeng Jiang 001; Zhen W. Zhuang; Albert J. Sinusas; Xenophon Papademetris (CVPR Workshops, 2010)

Constrained non-rigid registration using Lagrange multipliers for application in prostate radiotherapy. - Chao Lu 011; Sudhakar Chelikani; Xenophon Papademetris; Lawrence H. Staib; James S. Duncan (CVPR Workshops, 2010)

Light-sensitive visualization of multimodal data for neurosurgical applications. - Alark Joshi; Alexander Papanastassiou; Kenneth P. Vives; Dennis D. Spencer; Lawrence H. Staib; Xenophon Papademetris (ISBI, 2010)

Serial nonrigid vascular registration using weighted normalized mutual information. - Jung W. Suh; Dustin Scheinost; Xiaoning Qian; Albert J. Sinusas; Christopher K. Breuer; Xenophon Papademetris (ISBI, 2010)

Integrated Segmentation and Nonrigid Registration for Application in Prostate Image-Guided Radiotherapy. - Chao Lu 011; Sudhakar Chelikani; Zhe Chen 012; Xenophon Papademetris; Lawrence H. Staib; James S. Duncan (MICCAI (1), 2010)

Corrigendum to "Constrained non-rigid registration for use in image-guided adaptive radiotherapy" [Medical Image Analysis 13 (2009) 809-817]. - William Harvey Greene; Sudhakar Chelikani; Kailasnath Purushothaman; Jonathan Knisely; Zhe Chen 012; Xenophon Papademetris; Lawrence H. Staib; James S. Duncan (Medical Image Anal., 2010)

A coupled deformable model for tracking myocardial borders from real-time echocardiography using an incompressibility constraint. - Yun Zhu 001; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (Medical Image Anal., 2010)

Graph-theory based parcellation of functional subunits in the brain from resting-state fMRI data. - Xilin Shen; Xenophon Papademetris; R. Todd Constable (NeuroImage, 2010)

Image-Guided Intraoperative Cortical Deformation Recovery Using Game Theory: Application to Neocortical Epilepsy Surgery. - Christine DeLorenzo; Xenophon Papademetris; Lawrence H. Staib; Kenneth P. Vives; Dennis D. Spencer; James S. Duncan (IEEE Trans. Medical Imaging, 2010)

Segmentation of the Left Ventricle From Cardiac MR Images Using a Subject-Specific Dynamical Model. - Yun Zhu 001; Xenophon Papademetris; Albert J. Sinusas; James S. Duncan (IEEE Trans. Medical Imaging, 2010)

Augmented inline-based navigation for stereotactic image guided neurosurgery. - Alark Joshi; Dustin Scheinost; R. Globinsky; Kenneth P. Vives; Dennis D. Spencer; Lawrence H. Staib; Xenophon Papademetris (ISBI, 2011)

Whole body nonrigid CT-PET registration using weighted demons. - Jung W. Suh; Oh-K. Kwon; Dustin Scheinost; Albert J. Sinusas; Gary W. Cline; Xenophon Papademetris (ISBI, 2011)

Integrated Parcellation and Normalization Using DTI Fasciculography. - Hon Pong Ho; Fei Wang 003; Xenophon Papademetris; Hilary P. Blumberg; Lawrence H. Staib (MICCAI (2), 2011)

Vessel Connectivity Using Murray's Hypothesis. - Yifeng Jiang 001; Zhen W. Zhuang; Albert J. Sinusas; Lawrence H. Staib; Xenophon Papademetris (MICCAI (3), 2011)

Biofeedback of Real-Time Functional Magnetic Resonance Imaging Data from the Supplementary Motor Area Reduces Functional Connectivity to Subcortical Regions. - Michelle Hampson; Dustin Scheinost; MaoLin Qiu; Jitendra Bhawnani; Cheryl Lacadie; James F. Leckman; R. Todd Constable; Xenophon Papademetris (Brain Connect., 2011)

An integrated approach to segmentation and nonrigid registration for application in image-guided pelvic radiotherapy. - Chao Lu 011; Sudhakar Chelikani; Xenophon Papademetris; Jonathan Knisely; Michael F. Milosevic; Zhe Chen 012; David A. Jaffray; Lawrence H. Staib; James S. Duncan (Medical Image Anal., 2011)

A non-rigid registration method for serial lower extremity hybrid SPECT/CT imaging. - Jung W. Suh; Dustin Scheinost; Donald P. Dione; Lawrence W. Dobrucki; Albert J. Sinusas; Xenophon Papademetris (Medical Image Anal., 2011)

Serial monitoring of endogenous neuroblast migration by cellular MRI. - Dorit Granot; Dustin Scheinost; Eleni A. Markakis; Xenios Papademetris; Erik M. Shapiro (NeuroImage, 2011)

A whole-brain voxel based measure of intrinsic connectivity contrast reveals local changes in tissue connectivity with anesthetic without a priori assumptions on thresholds or regions of interest. - Roberto Martuzzi; Ramachandran Ramani; MaoLin Qiu; Xilin Shen; Xenophon Papademetris; R. Todd Constable (NeuroImage, 2011)

Unified Framework for Development, Deployment and Robust Testing of Neuroimaging Algorithms. - Alark Joshi; Dustin Scheinost; Hirohito Okuda; Dominique Belhachemi; Isabella Murphy; Lawrence H. Staib; Xenophon Papademetris (Neuroinformatics, 2011)

A combined shape tracking and speckle tracking approach for 4D deformation analysis in echocardiography. - Colin B. Compas; Emily Y. Wong; Xiaojie Huang; Smita Sampath; Ben A. Lin; Xenophon Papademetris; Karl Thiele; Donald P. Dione; Albert J. Sinusas; Matthew O'Donnell; James S. Duncan (ISBI, 2012)

A Dynamical Appearance Model Based on Multiscale Sparse Representation: Segmentation of the Left Ventricle from 4D Echocardiography. - Xiaojie Huang; Donald P. Dione; Colin B. Compas; Xenophon Papademetris; Ben A. Lin; Albert J. Sinusas; James S. Duncan (MICCAI (3), 2012)

The intrinsic connectivity distribution: A novel contrast measure reflecting voxel level functional connectivity. - Dustin Scheinost; Jennifer R. Benjamin; Cheryl Lacadie; Betty R. Vohr; Karen C. Schneider; Laura R. Ment; Xenios Papademetris; R. Todd Constable (NeuroImage, 2012)

Volumetric Intraoperative Brain Deformation Compensation: Model Development and Phantom Validation. - Christine DeLorenzo; Xenophon Papademetris; Lawrence H. Staib; Kenneth P. Vives; Dennis D. Spencer; James S. Duncan (IEEE Trans. Medical Imaging, 2012)

Fasciculography: Robust Prior-Free Real-Time Normalized Volumetric Neural Tract Parcellation. - Hon Pong Ho; Fei Wang 003; Xenophon Papademetris; Hilary P. Blumberg; Lawrence H. Staib (IEEE Trans. Medical Imaging, 2012)

Fast nonrigid image registration using statistical deformation models learned from richly-annotated data. - John A. Onofrey; Lawrence H. Staib; Xenophon Papademetris (ISBI, 2013)

Learning Nonrigid Deformations for Constrained Multi-modal Image Registration. - John A. Onofrey; Lawrence H. Staib; Xenophon Papademetris (MICCAI (3), 2013)

Semi-supervised Learning of Nonrigid Deformations for Image Registration. - John A. Onofrey; Lawrence H. Staib; Xenophon Papademetris (MCV, 2013)

Coupled Intrinsic Connectivity: A Principled Method for Exploratory Analysis of Paired Data. - Dustin Scheinost; Xilin Shen; Emily S. Finn; Rajita Sinha; R. Todd Constable; Xenophon Papademetris (CDMRI/MMBC@MICCAI, 2013)

A left cerebellar pathway mediates language in prematurely-born young adults. - R. Todd Constable; Betty R. Vohr; Dustin Scheinost; Jennifer R. Benjamin; Robert K. Fulbright; Cheryl Lacadie; Karen C. Schneider; Karol H. Katz; Heping Zhang; Xenophon Papademetris; Laura R. Ment (NeuroImage, 2013)

Real-time fMRI links subjective experience with brain activity during focused attention. - Kathleen A. Garrison; Dustin Scheinost; Patrick D. Worhunsky; Hani M. Elwafi; Thomas A. Thornhill IV; Evan Thompson; Clifford D. Saron; Gaëlle Desbordes; Hedy Kober; Michelle Hampson; Jeremy R. Gray; R. Todd Constable; et al. (NeuroImage, 2013)

Groupwise whole-brain parcellation from resting-state fMRI data for network node identification. - Xilin Shen; Fuyuze Tokoglu; Xenios Papademetris; R. Todd Constable (NeuroImage, 2013)

A Graphics Processing Unit Accelerated Motion Correction Algorithm and Modular System for Real-time fMRI. - Dustin Scheinost; Michelle Hampson; MaoLin Qiu; Jitendra Bhawnani; R. Todd Constable; Xenophon Papademetris (Neuroinformatics, 2013)

Contour tracking in echocardiographic sequences via sparse representation and dictionary learning. - Xiaojie Huang; Donald P. Dione; Colin B. Compas; Xenophon Papademetris; Ben A. Lin; Alda Bregasi; Albert J. Sinusas; Lawrence H. Staib; James S. Duncan (Medical Image Anal., 2014)

The impact of image smoothness on intrinsic functional connectivity and head motion confounds. - Dustin Scheinost; Xenophon Papademetris; R. Todd Constable (NeuroImage, 2014)

Radial Basis Functions for Combining Shape and Speckle Tracking in 4D Echocardiography. - Colin B. Compas; Emily Y. Wong; Xiaojie Huang; Smita Sampath; Ben A. Lin; Prasanta Pal; Xenophon Papademetris; Karl Thiele; Donald P. Dione; Mitchel Stacy; Lawrence H. Staib; Albert J. Sinusas; et al. (IEEE Trans. Medical Imaging, 2014)

A Scalable Algorithm for Structured Kernel Feature Selection. - Shaogang Ren; Shuai Huang 001; John A. Onofrey; Xenios Papademetris; Xiaoning Qian (AISTATS, 2015)

Segmenting the Brain Surface from CT Images with Artifacts Using Dictionary Learning for Non-rigid MR-CT Registration. - John A. Onofrey; Lawrence H. Staib; Xenophon Papademetris (IPMI, 2015)

Learning nonrigid deformations for constrained point-based registration for image-guided MR-TRUS prostate intervention. - John A. Onofrey; Lawrence H. Staib; Saradwata Sarkar; Rajesh Venkataraman; Xenophon Papademetris (ISBI, 2015)

Corrigendum to "Contour tracking in echocardiographic sequences via sparse representation and dictionary learning" [Med. Image Anal.18(2) (2014) 253-271]. - Xiaojie Huang; Donald P. Dione; Colin B. Compas; Xenophon Papademetris; Ben A. Lin; Alda Bregasi; Albert J. Sinusas; Lawrence H. Staib; James S. Duncan (Medical Image Anal., 2015)

Correction to "Radial Basis Functions for Combining Shape and Speckle Tracking in 4D Echocardiography". - Colin B. Compas; Emily Y. Wong; Xiaojie Huang; Smita Sampath; Ben A. Lin; Prasanta Pal; Xenophon Papademetris; Karl Thiele; Donald P. Dione; Mitchel Stacy; Lawrence H. Staib; Albert J. Sinusas; et al. (IEEE Trans. Medical Imaging, 2015)

Low-Dimensional Non-Rigid Image Registration Using Statistical Deformation Models From Semi-Supervised Training Data. - John A. Onofrey; Xenophon Papademetris; Lawrence H. Staib (IEEE Trans. Medical Imaging, 2015)

MRI-TRUS Image Synthesis with Application to Image-Guided Prostate Intervention. - John A. Onofrey; Ilkay Öksüz; Saradwata Sarkar; Rajesh Venkataraman; Lawrence H. Staib; Xenophon Papademetris (SASHIMI@MICCAI, 2016)

The Generalized Steiner Cable-Trench Problem with Application to Error Correction in Vascular Image Analysis. - Eric Landquist; Francis J. Vasko; Gregory Kresge; Adam Tal; Yifeng Jiang 001; Xenophon Papademetris (OR, 2016)

BrainK for Structural Image Processing: Creating Electrical Models of the Human Head. - Kai Li; Xenophon Papademetris; Don M. Tucker (Comput. Intell. Neurosci., 2016)

A simple and efficient strategy for solving very large-scale generalized cable-trench problems. - Francis J. Vasko; Eric Landquist; Gregory Kresge; Adam Tal; Yifeng Jiang 001; Xenophon Papademetris (Networks, 2016)

Comparison of glomerular activity patterns by fMRI and wide-field calcium imaging: Implications for principles underlying odor mapping. - Basavaraju G. Sanganahalli; Michelle R. Rebello; Peter Herman; Xenophon Papademetris; Gordon M. Shepherd; Justus Valentijn Verhagen; Fahmeed Hyder (NeuroImage, 2016)

Fluctuations in Global Brain Activity Are Associated With Changes in Whole-Brain Connectivity of Functional Networks. - Dustin Scheinost; Fuyuze Tokoglu; Xilin Shen; Emily S. Finn; Stephanie Noble; Xenophon Papademetris; R. Todd Constable (IEEE Trans. Biomed. Eng., 2016)

Learning Non-rigid Deformations for Robust, Constrained Point-based Registration in Image-Guided MR-TRUS Prostate Intervention. - John A. Onofrey; Lawrence H. Staib; Saradwata Sarkar; Rajesh Venkataraman; Cayce B. Nawaf; Preston C. Sprenkle; Xenophon Papademetris (Medical Image Anal., 2017)

Can brain state be manipulated to emphasize individual differences in functional connectivity? - Emily S. Finn; Dustin Scheinost; Daniel M. Finn; Xilin Shen; Xenophon Papademetris; R. Todd Constable (NeuroImage, 2017)

Multisite reliability of MR-based functional connectivity. - Stephanie Noble; Dustin Scheinost; Emily S. Finn; Xilin Shen; Xenophon Papademetris; Sarah C. McEwen; Carrie E. Bearden; Jean Addington; Bradley G. Goodyear; Kristin S. Cadenhead; Heline Mirzakhanian; Barbara A. Cornblatt; et al. (NeuroImage, 2017)

2-Channel convolutional 3D deep neural network (2CC3D) for fMRI analysis: ASD classification and feature learning. - Xiaoxiao Li; Nicha C. Dvornek; Xenophon Papademetris; Juntang Zhuang; Lawrence H. Staib; Pamela Ventola; James S. Duncan (ISBI, 2018)

A fetal fMRI specific motion correction algorithm using 2nd order edge features. - Dustin Scheinost; John A. Onofrey; Soo Hyun Kwon; Sarah N. Cross; Gordon Sze; Laura R. Ment; Xenophon Papademetris (ISBI, 2018)

Better Feature Matching for Placental Panorama Construction. - Praneeth Sadda; John A. Onofrey; Mert Ozan Bahtiyar; Xenophon Papademetris (DATRA/PIPPI@MICCAI, 2018)

Deep Learning Retinal Vessel Segmentation from a Single Annotated Example: An Application of Cyclic Generative Adversarial Neural Networks. - Praneeth Sadda; John A. Onofrey; Xenophon Papademetris (CVII-STENT/LABELS@MICCAI, 2018)

Non-Rigid Event-by-Event Continuous Respiratory Motion Compensated List-Mode Reconstruction for PET. - Chung Chan; John A. Onofrey; Yiqiang Jian; Mary Germino; Xenophon Papademetris; Richard E. Carson; Chi Liu 001 (IEEE Trans. Medical Imaging, 2018)

Generalizable Multi-Site Training and Testing Of Deep Neural Networks Using Image Normalization. - John A. Onofrey; Dana I. Casetti-Dinescu; Andreas D. Lauritzen; Saradwata Sarkar; Rajesh Venkataraman; Richard E. Fan; Geoffrey A. Sonn; Preston C. Sprenkle; Lawrence H. Staib; Xenophon Papademetris (ISBI, 2019)

Deep-learned placental vessel segmentation for intraoperative video enhancement in fetoscopic surgery. - Praneeth Sadda; Metehan Imamoglu; Michael Dombrowski; Xenophon Papademetris; Mert Ozan Bahtiyar; John A. Onofrey (Int. J. Comput. Assist. Radiol. Surg., 2019)

Segmenting the Brain Surface From CT Images With Artifacts Using Locally Oriented Appearance and Dictionary Learning. - John A. Onofrey; Lawrence H. Staib; Xenophon Papademetris (IEEE Trans. Medical Imaging, 2019)

Adaptive Checkpoint Adjoint Method for Gradient Estimation in Neural ODE. - Juntang Zhuang; Nicha C. Dvornek; Xiaoxiao Li; Sekhar Tatikonda; Xenophon Papademetris; James S. Duncan (ICML, 2020)

AdaBelief Optimizer: Adapting Stepsizes by the Belief in Observed Gradients. - Juntang Zhuang; Tommy Tang; Yifan Ding; Sekhar Tatikonda; Nicha C. Dvornek; Xenophon Papademetris; James S. Duncan (NeurIPS, 2020)

Multiple-Shooting Adjoint Method for Whole-Brain Dynamic Causal Modeling. - Juntang Zhuang; Nicha C. Dvornek; Sekhar Tatikonda; Xenophon Papademetris; Pamela Ventola; James S. Duncan (IPMI, 2021)

Functional network properties derived from wide-field calcium imaging differ with wakefulness and across cell type. - David O'Connor; Francesca Mandino; Xilin Shen; Corey Horien; X. Ge; Peter Herman; Fahmeed Hyder; M. Crair; Xenophon Papademetris; EMR Lake; R. Todd Constable (NeuroImage, 2022)

Lessons from Clinical Communications for Explainable AI. - Alka V. Menon; Zahra Abba Omar; Nadia Nahar; Xenophon Papademetris; Lynn E. Fiellin; Christian Kästner (AIES (1), 2024)

Regulating Explainability in Machine Learning Applications - Observations from a Policy Design Experiment. - Nadia Nahar; Jenny Rowlett; Matthew Bray; Zahra Abba Omar; Xenophon Papademetris; Alka Menon; Christian Kästner (FAccT, 2024)

VidFuncta: Towards Generalizable Neural Representations for Ultrasound Videos. - Julia Wolleb; Florentin Bieder; Paul Friedrich 002; Hemant D. Tagare; Xenophon Papademetris (CoRR, 2025)