Xia Li

According to our database1, Xia Li authored at least 56 papers between 2004 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Article 
PhD thesis 
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Links

On csauthors.net:

Bibliography

2019
CellMarker: a manually curated resource of cell markers in human and mouse.
Nucleic Acids Research, 2019

CancerSEA: a cancer single-cell state atlas.
Nucleic Acids Research, 2019

Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers.
Nucleic Acids Research, 2019

Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability.
Briefings in Bioinformatics, 2019

2018
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease.
Nucleic Acids Research, 2018

DiseaseEnhancer: a resource of human disease-associated enhancer catalog.
Nucleic Acids Research, 2018

SEECancer: a resource for somatic events in evolution of cancer genome.
Nucleic Acids Research, 2018

MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases.
Nucleic Acids Research, 2018

LnChrom: a resource of experimentally validated lncRNA-chromatin interactions in human and mouse.
Database, 2018

Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes.
Briefings in Bioinformatics, 2018

2017
LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs.
Nucleic Acids Research, 2017

BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases.
Database, 2017

A comprehensive overview of lncRNA annotation resources.
Briefings in Bioinformatics, 2017

2015
ViRBase: a resource for virus-host ncRNA-associated interactions.
Nucleic Acids Research, 2015

Identifying novel associations between small molecules and miRNAs based on integrated molecular networks.
Bioinformatics, 2015

2014
The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure.
Journal of Biomedical Informatics, 2014

EpimiR: a database of curated mutual regulation between miRNAs and epigenetic modifications.
Database, 2014

2013
Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.
BMC Systems Biology, 2013

SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression.
Bioinformatics, 2013

Topologically inferring risk-active pathways toward precise cancer classification by directed random walk.
Bioinformatics, 2013

Identification of active transcription factor and miRNA regulatory pathways in Alzheimer's disease.
Bioinformatics, 2013

A Near-Transparent Cooperation Scheme in Cognitive Radio Networks.
Proceedings of the 78th IEEE Vehicular Technology Conference, 2013

2012
Screening for cancer associated MiRNAs through co-gene, co-function and co-pathway analysis.
Comp. in Bio. and Med., 2012

Dissection of human MiRNA regulatory influence to subpathway.
Briefings in Bioinformatics, 2012

2011
DOSim: An R package for similarity between diseases based on Disease Ontology.
BMC Bioinformatics, 2011

A novel network-based method for measuring the functional relationship between gene sets.
Bioinformatics, 2011

A sub-pathway-based approach for identifying drug response principal network.
Bioinformatics, 2011

A robust approach based on Weibull distribution for clustering gene expression data.
Algorithms for Molecular Biology, 2011

2010
Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test.
BMC Systems Biology, 2010

2009
Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways.
Bioinformatics, 2009

A Novel Method to Select High-risk Disease-Related Regions after a Genome Wide Haplotype-Based Association Study: An Application to Alcoholism.
Proceedings of the Sixth International Conference on Fuzzy Systems and Knowledge Discovery, 2009

Clinical Information Driven Ensemble Clustering for Inferring Robust Tumor Subtypes.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

Global Similarity and Local Variance in Human Gene Coexpression Networks.
Proceedings of the Artificial Intelligence and Computational Intelligence, 2009

2008
Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements.
BMC Systems Biology, 2008

Apparently low reproducibility of true differential expression discoveries in microarray studies.
Bioinformatics, 2008

Towards patterns tree of gene coexpression in eukaryotic species.
Bioinformatics, 2008

A SNP and KEGG Based Approach to Mine Risk Pathways Associated with Bipolar Disorder.
Proceedings of the Fourth International Conference on Natural Computation, 2008

2007
A Heuristic Approach for Target SNP Mining Based on Genome-Wide IBD Profile.
Proceedings of the Third International Conference on Natural Computation, 2007

The Research on the Relationship Between Adrenergic Receptor Subtypes.
Proceedings of the Third International Conference on Natural Computation, 2007

2006
Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling.
BMC Bioinformatics, 2006

Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules.
Bioinformatics, 2006

An Analysis of Gene Expression Relationships Between Periodically Expressed Genes in the Hela Cells.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

Association Research on Potassium Channel Subtypes and Functional Sites.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

Analysis of Sib-Pair IBD Profiles Using Ensemble Decision Tree Approach: Application to Alcoholism.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

A Novel Method for Expanding Current Annotations in Gene Ontology.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

2005
Towards precise classification of cancers based on robust gene functional expression profiles.
BMC Bioinformatics, 2005

G Protein Binding Sites Analysis.
Proceedings of the Fuzzy Systems and Knowledge Discovery, Second International Conference, 2005

A Novel Ensemble Decision Tree Approach for Mining Genes Coding Ion Channels for Cardiopathy Subtype.
Proceedings of the Fuzzy Systems and Knowledge Discovery, Second International Conference, 2005

A Novel Feature Ensemble Technology to Improve Prediction Performance of Multiple Heterogeneous Phenotypes Based on Microarray Data.
Proceedings of the Fuzzy Systems and Knowledge Discovery, Second International Conference, 2005

A New Method for Gene Functional Prediction Based on Homologous Expression Profile.
Proceedings of the Fuzzy Systems and Knowledge Discovery, Second International Conference, 2005

Large-Scale Ensemble Decision Analysis of Sib-Pair IBD Profiles for Identification of the Relevant Molecular Signatures for Alcoholism.
Proceedings of the Fuzzy Systems and Knowledge Discovery, Second International Conference, 2005

Analysis of Sib-Pair IBD Profiles and Genomic Context for Identification of the Relevant Molecular Signatures for Alcoholism.
Proceedings of the Fuzzy Systems and Knowledge Discovery, Second International Conference, 2005

Application of a Genetic Algorithm - Support Vector Machine Hybrid for Prediction of Clinical Phenotypes Based on Genome-Wide SNP Profiles of Sib Pairs.
Proceedings of the Fuzzy Systems and Knowledge Discovery, Second International Conference, 2005

2004
Reverse Engineering of Multiple Time-delayed Gene Regulatory Networks.
Proceedings of the 4th IEEE International Workshop on Source Code Analysis and Manipulation (SCAM 2004), 2004

Feature Gene Selection Based on a Hybrid between Genetic Algorithm and Support Vector Machine.
Proceedings of the 4th IEEE International Workshop on Source Code Analysis and Manipulation (SCAM 2004), 2004

Classification of Cancer Types Based on Decision Tree Analysis of Gene Function Expression Profiles.
Proceedings of the 4th IEEE International Workshop on Source Code Analysis and Manipulation (SCAM 2004), 2004


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