Classification of Cancer Types Based on Decision Tree Analysis of Gene Function Expression Profiles. - Zheng Guo 002; Tianwen Zhang; Shaoqi Rao; Qi Wang; Hui Yu; Xia Li 004 (SNPD, 2004)

Feature Gene Selection Based on a Hybrid between Genetic Algorithm and Support Vector Machine. - Li Li 090; Wei Jiang 023; Wu Linna; Shaoqi Rao; Zheng Guo 002; Xia Li 004 (SNPD, 2004)

Reverse Engineering of Multiple Time-delayed Gene Regulatory Networks. - Xia Li 004; Tianwen Zhang; Wei Jiang 023; Shaoqi Rao; Li Li 090; Zheng Guo 002 (SNPD, 2004)

Application of a Genetic Algorithm - Support Vector Machine Hybrid for Prediction of Clinical Phenotypes Based on Genome-Wide SNP Profiles of Sib Pairs. - Binsheng Gong; Zheng Guo 002; Jing Li 115; Guohua Zhu; Sali Lv; Shaoqi Rao; Xia Li 004 (FSKD (2), 2005)

Analysis of Sib-Pair IBD Profiles and Genomic Context for Identification of the Relevant Molecular Signatures for Alcoholism. - Chuanxing Li; Lei Du 002; Xia Li 004; Binsheng Gong; Jie Zhang; Shaoqi Rao (FSKD (2), 2005)

Large-Scale Ensemble Decision Analysis of Sib-Pair IBD Profiles for Identification of the Relevant Molecular Signatures for Alcoholism. - Xia Li 004; Shaoqi Rao; Wei Zhang; Zheng Guo 002; Wei Jiang 023; Lei Du 002 (FSKD (2), 2005)

A Novel Visualization Classifier and Its Applications. - Jie Li 055; Xianglong Tang; Xia Li 004 (FSKD (2), 2005)

A New Method for Gene Functional Prediction Based on Homologous Expression Profile. - Sali Lv; Qianghu Wang; Guangmei Zhang; Fengxia Wen; Zhenzhen Wang; Xia Li 004 (FSKD (2), 2005)

A Novel Feature Ensemble Technology to Improve Prediction Performance of Multiple Heterogeneous Phenotypes Based on Microarray Data. - Haiyun Wang; Qingpu Zhang; Yadong Wang 001; Xia Li 004; Shaoqi Rao; Zuquan Ding (FSKD (2), 2005)

A Novel Ensemble Decision Tree Approach for Mining Genes Coding Ion Channels for Cardiopathy Subtype. - Jie Zhang; Xia Li 004; Wei Jiang 023; Yanqiu Wang; Chuanxing Li; Qiuju Wang; Shaoqi Rao (FSKD (2), 2005)

G Protein Binding Sites Analysis. - Fan Zhang; Zhicheng Liu; Xia Li 004; Shaoqi Rao (FSKD (2), 2005)

Towards precise classification of cancers based on robust gene functional expression profiles. - Zheng Guo 002; Tianwen Zhang; Xia Li 004; Qi Wang; Jianzhen Xu; Hui Yu; Jing Zhu 004; Haiyun Wang; Chenguang Wang 004; Eric J. Topol; Qing Wang; Shaoqi Rao (BMC Bioinform., 2005)

A Novel Method for Expanding Current Annotations in Gene Ontology. - Dapeng Hao; Xia Li 004; Lei Du 002; Liangde Xu; Jiankai Xu; Shaoqi Rao (ICIC (3), 2006)

Analysis of Sib-Pair IBD Profiles Using Ensemble Decision Tree Approach: Application to Alcoholism. - Yang Jiang; Qingpu Zhang; Xia Li 004; Lei Du 002; Wei Jiang 023; Ruijie Zhang; Jing Li 115; Shaoqi Rao (ICIC (3), 2006)

Association Research on Potassium Channel Subtypes and Functional Sites. - Peng Wu; Xia Li 004; Shaoqi Rao; Wei Jiang 023; Chuanxing Li; Jie Zhang (ICIC (3), 2006)

An Analysis of Gene Expression Relationships Between Periodically Expressed Genes in the Hela Cells. - Yun Xiao 001; Xia Li 004; Shaoqi Rao; Juan Wang; Yun Zhang; Lei Du 002 (ICIC (3), 2006)

Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules. - Dong Wang 011; Yingli Lv; Zheng Guo 002; Xia Li 004; Yanhui Li; Jing Zhu 004; Da Yang 003; Jianzhen Xu; Chenguang Wang 004; Shaoqi Rao; Baofeng Yang (Bioinform., 2006)

Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling. - Xia Li 004; Shaoqi Rao; Wei Jiang 023; Chuanxing Li; Yun Xiao 001; Zheng Guo 002; Qingpu Zhang; Lihong Wang; Lei Du 002; Jing Li 115; Li Li 090; Tianwen Zhang; et al. (BMC Bioinform., 2006)

The Research on the Relationship Between Adrenergic Receptor Subtypes. - Hailong Yu; Yan Xu; Yun Xiao 001; Xia Li 004 (ICNC (5), 2007)

A Heuristic Approach for Target SNP Mining Based on Genome-Wide IBD Profile. - Fan Zhang; Xia Li 004; Ivan Viktorovich Krivosheev; Binsheng Gong; Lei Du 002; Chunquan Li 002 (ICNC (5), 2007)

A SNP and KEGG Based Approach to Mine Risk Pathways Associated with Bipolar Disorder. - Liangcai Zhang; Lina Chen; Yan Zhao; Liangde Xu; Yukui Shang; Qian Wang; Xia Li 004 (ICNC (5), 2008)

A Systematic Method Based on Haplotype Analysis: Application to Risk Alleles and Genes Mining for RA. - Rui-jie Zhang; Yong-shuai Jian; Guiyou Liu; Zhen Wang; Xia Li 004; Zhiqiang Chen; Jin Li 024; Chen Huang (ICNC (5), 2008)

Towards patterns tree of gene coexpression in eukaryotic species. - Haiyun Wang; Qi Wang; Xia Li 004; Bairong Shen; Min Ding 006; Ziyin Shen (Bioinform., 2008)

Apparently low reproducibility of true differential expression discoveries in microarray studies. - Min Zhang 009; Chen Yao; Zheng Guo 002; Jinfeng Zou; Lin Zhang; Hui Xiao; Dong Wang 011; Da Yang 003; Xue Gong; Jing Zhu 004; Yanhui Li; Xia Li 004 (Bioinform., 2008)

Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements. - Wei Jiang 023; Xia Li 004; Shaoqi Rao; Lihong Wang; Lei Du 002; Chuanxing Li; Chao Wu; Hongzhi Wang 001; Yadong Wang 001; Baofeng Yang (BMC Syst. Biol., 2008)

Global Similarity and Local Variance in Human Gene Coexpression Networks. - Ivan Krivosheev; Lei Du 002; Hongzhi Wang 001; Shaojun Zhang; Yadong Wang 001; Xia Li 004 (AICI, 2009)

Clinical Information Driven Ensemble Clustering for Inferring Robust Tumor Subtypes. - Haiyun Wang; Min Ding 006; Xia Li 004; Bairong Shen (BMEI, 2009)

A Novel Method to Select High-risk Disease-Related Regions after a Genome Wide Haplotype-Based Association Study: An Application to Alcoholism. - Guiyou Liu; Yongshuai Jiang; Ruijie Zhang; Zhen Wang; Mingming Zhang; Ruimin Zhang; Xia Li 004 (FSKD (5), 2009)

Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways. - Lina Chen; Liangcai Zhang; Yan Zhao; Liangde Xu; Yukui Shang; Qian Wang; Wan Li; Hong Wang; Xia Li 004 (Bioinform., 2009)

Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test. - Chao Wu; Fan Zhang; Xia Li 004; Shihua Zhang; Jiang Li; Fei Su; Kongning Li; YuQing Yan (BMC Syst. Biol., 2010)

A robust approach based on Weibull distribution for clustering gene expression data. - Huakun Wang; Zhenzhen Wang; Xia Li 004; Binsheng Gong; Lixin Feng; Ying Zhou (Algorithms Mol. Biol., 2011)

A sub-pathway-based approach for identifying drug response principal network. - Xiujie Chen; Jiankai Xu; Bangqing Huang; Jin Li 024; Xin Wu; Ling Ma; Xiaodong Jia; Xiusen Bian; Fujian Tan; Lei Liu; Sheng Chen; Xia Li 004 (Bioinform., 2011)

A novel network-based method for measuring the functional relationship between gene sets. - Qianghu Wang; Jie Sun 021; Meng Zhou 003; Haixiu Yang; Yan Li; Xiang Li; Sali Lv; Xia Li 004; Yixue Li (Bioinform., 2011)

DOSim: An R package for similarity between diseases based on Disease Ontology. - Jiang Li; Bingsheng Gong; Xi Chen; Tao Liu; Chao Wu; Fan Zhang; Chunquan Li 002; Xiang Li; Shaoqi Rao; Xia Li 004 (BMC Bioinform., 2011)

Dissection of human MiRNA regulatory influence to subpathway. - Xia Li 004; Wei Jiang 023; Wei Li; Baofeng Lian; Shuyuan Wang; Mingzhi Liao; Xiaowen Chen; Yanqiu Wang; Yingli Lv; Shiyuan Wang; Lei Yang (Briefings Bioinform., 2012)

Screening for cancer associated MiRNAs through co-gene, co-function and co-pathway analysis. - Xue Xiao; Dongguo Li; Lei Gao; Xia Li 004; Qianghu Wang; Shaojun Zhang; Zhicheng Liu (Comput. Biol. Medicine, 2012)

Identification of active transcription factor and miRNA regulatory pathways in Alzheimer's disease. - Wei Jiang 023; Yan Zhang; Fanlin Meng; Baofeng Lian; Xiaowen Chen; Xuexin Yu; Enyu Dai; Shuyuan Wang; Xinyi Liu; Xiang Li; Lihong Wang; Xia Li 004 (Bioinform., 2013)

Topologically inferring risk-active pathways toward precise cancer classification by directed random walk. - Wei Liu 187; Chunquan Li 002; Yanjun Xu; Haixiu Yang; Qianlan Yao; Junwei Han 003; Desi Shang; Chunlong Zhang; Fei Su; Xiaoxi Li; Yun Xiao 001; Fan Zhang; et al. (Bioinform., 2013)

SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression. - Xinyi Liu; Shuyuan Wang; Fanlin Meng; Jizhe Wang; Yan Zhang; Enyu Dai; Xuexin Yu; Xia Li 004; Wei Jiang 023 (Bioinform., 2013)

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes. - Hongbo Shi; Juan Xu 001; Guangde Zhang; Liangde Xu; Chunquan Li 002; Li Wang 164; Zheng Zhao; Wei Jiang 023; Zheng Guo 002; Xia Li 004 (BMC Syst. Biol., 2013)

EpimiR: a database of curated mutual regulation between miRNAs and epigenetic modifications. - Enyu Dai; Xuexin Yu; Yan Zhang; Fanlin Meng; Shuyuan Wang; Xinyi Liu; Dianming Liu; Jing Wang 004; Xia Li 004; Wei Jiang 023 (Database J. Biol. Databases Curation, 2014)

LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs. - Shangwei Ning; Zuxianglan Zhao; Jingrun Ye; Peng Wang 082; Hui Zhi; Ronghong Li; Tingting Wang; Xia Li 004 (BMC Bioinform., 2014)

The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure. - Jing Li 115; Chunquan Li 002; Junwei Han 003; Chunlong Zhang; Desi Shang; Qianlan Yao; Yunpeng Zhang; Yanjun Xu; Wei Liu 187; Meng Zhou 003; Haixiu Yang; Fei Su; et al. (J. Biomed. Informatics, 2014)

miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs. - Peng Wang 082; Hui Zhi; Yunpeng Zhang; Yue Liu; Jizhou Zhang; Yue Gao 004; Maoni Guo; Shangwei Ning; Xia Li 004 (Database J. Biol. Databases Curation, 2015)

Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data. - Zheng Zhao; Jing Bai 014; Aiwei Wu; Yuan Wang; Jinwen Zhang; Zishan Wang; Yongsheng Li 001; Juan Xu 001; Xia Li 004 (Database J. Biol. Databases Curation, 2015)

Identifying novel associations between small molecules and miRNAs based on integrated molecular networks. - Yingli Lv; Shuyuan Wang; Fanlin Meng; Lei Yang; Zhifeng Wang; Jing Wang 004; Xiaowen Chen; Wei Jiang 023; Yixue Li; Xia Li 004 (Bioinform., 2015)

Prediction of potential disease-associated microRNAs based on random walk. - Ping Xuan; Ke Han; Yahong Guo; Jin Li 024; Xia Li 004; Yingli Zhong; Zhaogong Zhang; Jian Ding (Bioinform., 2015)

ViRBase: a resource for virus-host ncRNA-associated interactions. - Yanhui Li; Changliang Wang; Zhengqiang Miao; Xiaoman Bi; Deng Wu; Nana Jin; Liqiang Wang; Hao Wu; Kun Qian; Chunhua Li 004; Ting Zhang; Chunrui Zhang 003; et al. (Nucleic Acids Res., 2015)

Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. - Shangwei Ning; Jizhou Zhang; Peng Wang 082; Hui Zhi; Jianjian Wang; Yue Liu; Yue Gao 004; Maoni Guo; Ming Yue 003; Lihua Wang 002; Xia Li 004 (Nucleic Acids Res., 2016)

A comprehensive overview of lncRNA annotation resources. - Jinyuan Xu; Jing Bai 014; Xinxin Zhang; Yanling Lv; Yonghui Gong; Ling Liu; Hongying Zhao; Fulong Yu; Yanyan Ping; Guanxiong Zhang; Yujia Lan; Yun Xiao 001; et al. (Briefings Bioinform., 2017)

miRNA-miRNA crosstalk: from genomics to phenomics. - Juan Xu 001; Tingting Shao; Na Ding; Yongsheng Li 001; Xia Li 004 (Briefings Bioinform., 2017)

BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases. - Yanjun Xu; Haixiu Yang; Tan Wu; Qun Dong; Zeguo Sun; Desi Shang; Feng Li; Yingqi Xu; Fei Su; Siyao Liu; Yunpeng Zhang; Xia Li 004 (Database J. Biol. Databases Curation, 2017)

LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs. - Shangwei Ning; Ming Yue 003; Peng Wang 082; Yue Liu; Hui Zhi; Yan Zhang; Jizhou Zhang; Yue Gao 004; Maoni Guo; Dianshuang Zhou; Xin Li; Xia Li 004 (Nucleic Acids Res., 2017)

Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes. - Juan Xu 001; Zishan Wang; Shengli Li 005; Juan Chen; Jinwen Zhang; Chunjie Jiang; Zheng Zhao; Jing Li 115; Yongsheng Li 001; Xia Li 004 (Briefings Bioinform., 2018)

LnChrom: a resource of experimentally validated lncRNA-chromatin interactions in human and mouse. - Fulong Yu; Guanxiong Zhang; Aiai Shi; Jing Hu; Feng Li; Xinxin Zhang; Yan Zhang; Jian Huang 004; Yun Xiao 001; Xia Li 004; Shujun Cheng (Database J. Biol. Databases Curation, 2018)

MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases. - Ming Yue 003; Dianshuang Zhou; Hui Zhi; Peng Wang 082; Yan Zhang; Yue Gao 004; Maoni Guo; Xin Li; Yanxia Wang; Yunpeng Zhang; Shangwei Ning; Xia Li 004 (Nucleic Acids Res., 2018)

SEECancer: a resource for somatic events in evolution of cancer genome. - Hongyi Zhang; Shangyi Luo; Xinxin Zhang; Jianlong Liao; Fei Quan; Erjie Zhao; Chenfen Zhou; Fulong Yu; Wenkang Yin; Yunpeng Zhang; Yun Xiao 001; Xia Li 004 (Nucleic Acids Res., 2018)

DiseaseEnhancer: a resource of human disease-associated enhancer catalog. - Guanxiong Zhang; Jian Shi; Shiwei Zhu; Yujia Lan; Liwen Xu; Huating Yuan; Gaoming Liao; Xiaoqin Liu; Yunpeng Zhang; Yun Xiao 001; Xia Li 004 (Nucleic Acids Res., 2018)

Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease. - Hui Zhi; Xin Li; Peng Wang 082; Yue Gao 004; Baoqing Gao; Dianshuang Zhou; Yan Zhang; Maoni Guo; Ming Yue 003; Weitao Shen; Shangwei Ning; Lianhong Jin; et al. (Nucleic Acids Res., 2018)

An Effective Method to Improve the Accuracy of Precise Funding in Campus. - Heng Li 014; Xiao Zhang 014; Xia Li 004; Yanqiu Wang (CSAE, 2019)

Improving Identification of Essential Proteins by a Novel Ensemble Method. - Wei Dai 012; Xia Li 004; Wei Peng 004; Jurong Song; Jiancheng Zhong; Jianxin Wang 001 (ISBRA, 2019)

Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability. - Yulan Deng; Shangyi Luo; Chunyu Deng; Tao Luo; Wenkang Yin; Hongyi Zhang; Yong Zhang; Xinxin Zhang; Yujia Lan; Yanyan Ping; Yun Xiao 001; Xia Li 004 (Briefings Bioinform., 2019)

Landscape of the long non-coding RNA transcriptome in human heart. - Chunjie Jiang; Na Ding; Junyi Li; Xiyun Jin; Lili Li; Tao Pan; Caiqin Huo; Yongsheng Li 001; Juan Xu 001; Xia Li 004 (Briefings Bioinform., 2019)

Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases. - Yongsheng Li 001; Caiqin Huo; Tao Pan; Lili Li; Xiyun Jin; Xiaoyu Lin; Juan Chen; Jinwen Zhang; Zheng Guo 002; Juan Xu 001; Xia Li 004 (Briefings Bioinform., 2019)

Survey of miRNA-miRNA cooperative regulation principles across cancer types. - Tingting Shao; Guangjuan Wang; Hong Chen 022; Yunjin Xie; Xiyun Jin; Jing Bai 014; Juan Xu 001; Xia Li 004; Jian Huang 004; Yan Jin 007; Yongsheng Li 001 (Briefings Bioinform., 2019)

Breast cancer prognosis signature: linking risk stratification to disease subtypes. - Fulong Yu; Fei Quan; Jinyuan Xu; Yan Zhang; Yi Xie; Jingyu Zhang; Yujia Lan; Huating Yuan; Hongyi Zhang; Shujun Cheng; Yun Xiao 001; Xia Li 004 (Briefings Bioinform., 2019)

Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers. - Yue Gao 004; Peng Wang 082; Yanxia Wang; Xueyan Ma; Hui Zhi; Dianshuang Zhou; Xin Li; Ying Fang; Weitao Shen; Yingqi Xu; Shipeng Shang; Lihua Wang 002; et al. (Nucleic Acids Res., 2019)

LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low- and high-throughput experiments. - Peng Wang 082; Xin Li; Yue Gao 004; Qiuyan Guo; Yanxia Wang; Ying Fang; Xueyan Ma; Hui Zhi; Dianshuang Zhou; Weitao Shen; Weisha Liu; Lihua Wang 002; et al. (Nucleic Acids Res., 2019)

CancerSEA: a cancer single-cell state atlas. - Huating Yuan; Min Yan; Guanxiong Zhang; Wei Liu 187; Chunyu Deng; Gaoming Liao; Liwen Xu; Tao Luo; Haoteng Yan; Zhilin Long; Aiai Shi; Tingting Zhao; et al. (Nucleic Acids Res., 2019)

CellMarker: a manually curated resource of cell markers in human and mouse. - Xinxin Zhang; Yujia Lan; Jinyuan Xu; Fei Quan; Erjie Zhao; Chunyu Deng; Tao Luo; Liwen Xu; Gaoming Liao; Min Yan; Yanyan Ping; Feng Li; et al. (Nucleic Acids Res., 2019)

Construct the Students' Consumption Portrait Based on Large-scale Campus Data. - Heng Li 014; Xiao Zhang 014; Xia Li 004; Yanqiu Wang; Yulong Ling; Di Mu (ICMLC, 2020)

Highly Precise Birefringence Demodulation to Overcome the Sensing Limitation From the Free Spectral Range on the Fiber Lyot Filter. - Wei Li 147; Tiantian Ruan; Min Xia 004; Xia Li 004 (IEEE Access, 2020)

RNAactDrug: a comprehensive database of RNAs associated with drug sensitivity from multi-omics data. - Qun Dong; Feng Li; Yanjun Xu; Jing Xiao; Yingqi Xu; Desi Shang; Chunlong Zhang; Haixiu Yang; Zihan Tian; Kai Mi 003; Xia Li 004; Yunpeng Zhang (Briefings Bioinform., 2020)

A comprehensive overview of oncogenic pathways in human cancer. - Feng Li; Tan Wu; Yanjun Xu; Qun Dong; Jing Xiao; Yingqi Xu; Qian Li; Chunlong Zhang; Jianxia Gao; Liqiu Liu; Xiaoxu Hu; Jian Huang 004; et al. (Briefings Bioinform., 2020)

Identification and comprehensive characterization of lncRNAs with copy number variations and their driving transcriptional perturbed subpathways reveal functional significance for cancer. - Yanjun Xu; Tan Wu; Feng Li; Qun Dong; Jingwen Wang; Desi Shang; Yingqi Xu; Chunlong Zhang; Yiying Dou; Congxue Hu; Haixiu Yang; Xuan Zheng; et al. (Briefings Bioinform., 2020)

LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation. - Peng Wang 082; Xin Li; Yue Gao 004; Qiuyan Guo; Shangwei Ning; Yunpeng Zhang; Shipeng Shang; Junwei Wang; Yanxia Wang; Hui Zhi; Ying Fang; Weitao Shen; et al. (Nucleic Acids Res., 2020)

LncTarD: a manually-curated database of experimentally-supported functional lncRNA?target regulations in human diseases. - Hongying Zhao; Jian Shi; Yunpeng Zhang; Aimin Xie; Lei Yu; Caiyu Zhang; Junjie Lei; Haotian Xu; Zhijun Leng; Tengyue Li; Waidong Huang; Shihua Lin; et al. (Nucleic Acids Res., 2020)

CeRNASeek: an R package for identification and analysis of ceRNA regulation. - Mengying Zhang; Xiyun Jin; Junyi Li; Yi Tian; Qi Wang; Xinhui Li; Juan Xu 001; Yongsheng Li 001; Xia Li 004 (Briefings Bioinform., 2021)

SurvivalMeth: a web server to investigate the effect of DNA methylation-related functional elements on prognosis. - Chunlong Zhang; Ning Zhao; Xue Zhang; Jun Xiao; Junyi Li; Dezhong Lv; Weiwei Zhou; Yongsheng Li 001; Juan Xu 001; Xia Li 004 (Briefings Bioinform., 2021)

A Novel Multi-Ensemble Method for Identifying Essential Proteins. - Wei Dai 012; Bingxi Chen; Wei Peng 004; Xia Li 004; Jiancheng Zhong; Jianxin Wang 001 (J. Comput. Biol., 2021)

LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements. - Yue Gao 004; Xin Li; Shipeng Shang; Shuang Guo 001; Peng Wang 082; Dailin Sun; Jing Gan; Jie Sun 021; Yakun Zhang 003; Junwei Wang; Xinyue Wang; Xia Li 004; et al. (Nucleic Acids Res., 2021)

Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. - Yue Gao 004; Shipeng Shang; Shuang Guo 001; Xin Li; Hanxiao Zhou; Hongjia Liu; Yue Sun; Junwei Wang; Peng Wang 082; Hui Zhi; Xia Li 004; Shangwei Ning; et al. (Nucleic Acids Res., 2021)

LnCeCell: a comprehensive database of predicted lncRNA-associated ceRNA networks at single-cell resolution. - Peng Wang 082; Qiuyan Guo; Yangyang Hao; Qian Liu; Yue Gao 004; Hui Zhi; Xin Li; Shipeng Shang; Shuang Guo 001; Yunpeng Zhang; Shangwei Ning; Xia Li 004 (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

Research on Restoration Algorithm of Tomb Murals Based on Sequential Similarity Detection. - Wang Liu; Xia Li 004; Fengjiao Wu (Sci. Program., 2021)

Identifying and characterizing drug sensitivity-related lncRNA-TF-gene regulatory triplets. - Congxue Hu; Yingqi Xu; Feng Li; Wanqi Mi; He Yu; Xinran Wang; Xin Wen; Shuaijun Chen; Xia Li 004; Yanjun Xu; Yunpeng Zhang (Briefings Bioinform., 2022)

Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer. - Xin Li; Xu Pan; Hanxiao Zhou; Peng Wang 082; Yue Gao 004; Shipeng Shang; Shuang Guo 001; Jie Sun 021; Zhiying Xiong; Shangwei Ning; Hui Zhi; Xia Li 004 (Briefings Bioinform., 2022)

PRES: a webserver for decoding the functional perturbations of RNA editing sites. - Dezhong Lv; Kang Xu; Changbo Yang; Yujie Liu; Ya Luo; Weiwei Zhou; Haozhe Zou; Yangyang Cai; Na Ding; Xia Li 004; Tingting Shao; Yongsheng Li 001; et al. (Briefings Bioinform., 2022)

Revealing the contribution of somatic gene mutations to shaping tumor immune microenvironment. - Liwen Xu; Shiwei Zhu; Yujia Lan; Min Yan; Zedong Jiang; Jiali Zhu; Gaoming Liao; Yanyan Ping; Jinyuan Xu; Bo Pang; Yunpeng Zhang; Yun Xiao 001; et al. (Briefings Bioinform., 2022)

HCDT: an integrated highly confident drug-target resource. - Jiaqi Chen; Zhengxin Chen; Rufei Chen; Dehua Feng; Tianyi Li; Huirui Han 001; Xiaoman Bi; Zhenzhen Wang; Kongning Li; Yongsheng Li 001; Xia Li 004; Limei Wang; et al. (Database J. Biol. Databases Curation, 2022)

TransLnc: a comprehensive resource for translatable lncRNAs extends immunopeptidome. - Dezhong Lv; Zhenghong Chang; Yangyang Cai; Junyi Li; Liping Wang; Qiushuang Jiang; Kang Xu; Na Ding; Xia Li 004; Juan Xu 001; Yongsheng Li 001 (Nucleic Acids Res., 2022)

LncACTdb 3.0: an updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine. - Peng Wang 082; Qiuyan Guo; Yue Qi; Yangyang Hao; Yue Gao 004; Hui Zhi; Yuanfu Zhang; Yue Sun; Yakun Zhang 003; Mengyu Xin; Yunpeng Zhang; Shangwei Ning; et al. (Nucleic Acids Res., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

AgingBank: a manually curated knowledgebase and high-throughput analysis platform that provides experimentally supported multi-omics data relevant to aging in multiple species. - Yue Gao 004; Shipeng Shang; Shuang Guo 001; Xinyue Wang; Hanxiao Zhou; Yue Sun; Jing Gan; Yakun Zhang 003; Xia Li 004; Shangwei Ning; Yunpeng Zhang (Briefings Bioinform., 2022)

IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions. - Yangyang Cai; Dezhong Lv; Donghao Li; Jiaqi Yin; Yingying Ma; Ya Luo; Limei Fu; Na Ding; Yongsheng Li 001; Zhenwei Pan; Xia Li 004; Juan Xu 001 (Nucleic Acids Res., 2023)

CellTracer: a comprehensive database to dissect the causative multilevel interplay contributing to cell development trajectories. - Qiuyan Guo; Peng Wang 082; Qian Liu; Yangyang Hao; Yue Gao 004; Yue Qi; Rongji Xu; Hongyan Chen; Mengyu Xin; Xiaoting Wu; Rui Sun; Hui Zhi; et al. (Nucleic Acids Res., 2023)

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data. - Congxue Hu; Tengyue Li; Yingqi Xu; Xinxin Zhang; Feng Li; Jing Bai 014; Jing Chen; Wenqi Jiang; Kaiyue Yang; Qi Ou; Xia Li 004; Peng Wang 082; et al. (Nucleic Acids Res., 2023)

Open a new epoch of arsenic trioxide investigation: ATOdb. - Yanan Jiang; Jianing Li; Yujie Liu; Xiuyun Shen; Junyi Li; Fengnan Zhi; Juan Xu 001; Xia Li 004; Tingting Shao; Yingqi Xu (Comput. Biol. Medicine, 2023)

Tumor biology, immune infiltration and liver function define seven hepatocellular carcinoma subtypes linked to distinct drivers, survival and drug response. - Ruihong Wu; Yue Gao 004; Xiaoxi Zhao; Shuang Guo 001; Hanxiao Zhou; Yakun Zhang 003; Yaopan Hou; Lan Mei; Hui Zhi; Peng Wang 082; Xia Li 004; Shangwei Ning; et al. (Comput. Biol. Medicine, 2023)

Identifying cell type-specific transcription factor-mediated activity immune modules reveal implications for immunotherapy and molecular classification of pan-cancer. - Feng Li; Jingwen Wang; Mengyue Li; Xiaomeng Zhang; Yongjuan Tang; Xinyu Song; Yifang Zhang; Liying Pei; Jiaqi Liu; Chunlong Zhang; Xia Li 004; Yanjun Xu; et al. (Briefings Bioinform., 2024)

Comprehensive quantitative radiogenomic evaluation reveals novel radiomic subtypes with distinct immune pattern in glioma. - Yue Sun; Yakun Zhang 003; Jing Gan; Hanxiao Zhou; Shuang Guo 001; Xinyue Wang; Caiyu Zhang; Wen Zheng; Xiaoxi Zhao; Xia Li 004; Li Wang 164; Shangwei Ning (Comput. Biol. Medicine, 2024)

AVM: A Manually Curated Database of Aerosol-transmitted Virus Mutations, Human Diseases, and Drugs. - Lan Mei; Yaopan Hou; Jiajun Zhou; Yetong Chang; Yuwei Liu; Di Wang; Yunpeng Zhang; Shangwei Ning; Xia Li 004 (Genom. Proteom. Bioinform., 2024)

Mapping enhancer and chromatin accessibility landscapes charts the regulatory network of Alzheimer's disease. - Dahua Xu; Chunrui Zhang 003; Xiaoman Bi; Jiankai Xu; Shengnan Guo; Peihu Li; Yutong Shen; Jiale Cai; Nihui Zhang; Guanghui Tian; Haifei Zhang; Hong Wang; et al. (Comput. Biol. Medicine, 2024)