An information-flow-based model with dissipation, saturation and direction for active pathway inference. - Xian-Wen Ren; Xiaobo Zhou 001; Ling-Yun Wu; Xiang-Sun Zhang (BMC Syst. Biol., 2010)

Binary matrix factorization for analyzing gene expression data. - Zhongyuan Zhang; Tao Li 001; Chris H. Q. Ding; Xian-Wen Ren; Xiang-Sun Zhang (Data Min. Knowl. Discov., 2010)

A linear programming model based on network flow for pathway inference. - Xian-Wen Ren; Xiang-Sun Zhang (J. Syst. Sci. Complex., 2010)

Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation. - Xian-Wen Ren; Yong-Cui Wang; Yong Wang 001; Xiang-Sun Zhang; Nai-Yang Deng (BMC Bioinform., 2011)

A unified computational model for revealing and predicting subtle subtypes of cancers. - Xian-Wen Ren; Yong Wang 001; Jiguang Wang; Xiang-Sun Zhang (BMC Bioinform., 2012)

Discovering cooperative biomarkers for heterogeneous complex disease diagnoses. - Duanchen Sun; Xian-Wen Ren; Eszter Ari; Tamás Korcsmáros; Peter Csermely; Ling-Yun Wu (Briefings Bioinform., 2019)