A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry. - Changyu Shen; Zhiping Wang; Ganesh Shankar; Xiang Zhang 003; Lang Li 001 (Bioinform., 2008)

Prediction of peptide drift time in ion mobility-mass spectrometry. - Bing Wang 004; Steve Valentine; Sriram Raghuraman; Manolo Plasencia; Xiang Zhang 003 (BMC Bioinform., 2009)

Optimal Selection of Support Vector Regression Parameters and Molecular Descriptors for Retention Indices Prediction. - Jun Zhang 011; Bing Wang 004; Xiang Zhang 003 (ICIC (2), 2010)

Statistical analysis of multiple significance test methods for differential proteomics. - Bing Wang 004; Fahim Mohammad; Jun Zhang 011; Xinmin Yin; Eric C. Rouchka; Xiang Zhang 003 (BMC Bioinform., 2010)

Artificial neural networks for the prediction of peptide drift time in ion mobility mass spectrometry. - Bing Wang 004; Steve Valentine; Manolo Plasencia; Sriram Raghuraman; Xiang Zhang 003 (BMC Bioinform., 2010)

DISCO2: A Comprehensive Peak Alignment Algorithm for Two-Dimensional Gas Chromatography Time-of-Flight Mass Spectrometry. - Bing Wang 004; Aiqin Fang; Xue Shi; Seongho Kim; Xiang Zhang 003 (ICIC (3), 2011)

An optimal peak alignment for comprehensive two-dimensional gas chromatography mass spectrometry using mixture similarity measure. - Seongho Kim; Aiqin Fang; Bing Wang 004; Jaesik Jeong; Xiang Zhang 003 (Bioinform., 2011)

An empirical Bayes model using a competition score for metabolite identification in gas chromatography mass spectrometry. - Jaesik Jeong; Xue Shi; Xiang Zhang 003; Seongho Kim; Changyu Shen (BMC Bioinform., 2011)

Smith-Waterman Peak Alignment for Comprehensive Two-dimensional Gas Chromatography Mass Spectrometry. - Seongho Kim; Imhoi Koo; Aiqin Fang; Xiang Zhang 003 (BMC Bioinform., 2011)

Reconstruction of Metabolic Association Networks Using High-throughput Mass Spectrometry Data. - Imhoi Koo; Xiang Zhang 003; Seongho Kim (ICIC (1), 2012)

A Novel Two-Stage Alignment Method for Liquid Chromatography Mass Spectrometry-Based Metabolomics. - Xiaoli Wei; Xue Shi; Seongho Kim; Craig McClain; Xiang Zhang 003 (ICIC (1), 2012)

Compute spearman correlation coefficient with Matlab/CUDA. - Seongho Kim; Ming Ouyang; Xiang Zhang 003 (ISSPIT, 2012)

A method of finding optimal weight factors for compound identification in gas chromatography-mass spectrometry. - Seongho Kim; Imhoi Koo; Xiaoli Wei; Xiang Zhang 003 (Bioinform., 2012)

Model-based peak alignment of metabolomic profiling from comprehensive two-dimensional gas chromatography mass spectrometry. - Jaesik Jeong; Xue Shi; Xiang Zhang 003; Seongho Kim; Changyu Shen (BMC Bioinform., 2012)

MetPP: a computational platform for comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry-based metabolomics. - Xiaoli Wei; Xue Shi; Imhoi Koo; Seongho Kim; Robin H. Schmidt; Gavin E. Arteel; Walter H. Watson; Craig McClain; Xiang Zhang 003 (Bioinform., 2013)

An efficient post-hoc integration method improving peak alignment of metabolomics data from GCxGC/TOF-MS. - Jaesik Jeong; Xiang Zhang 003; Xue Shi; Seongho Kim; Changyu Shen (BMC Bioinform., 2013)

Comparative Analysis of Mass Spectral Similarity Measures on Peak Alignment for Comprehensive Two-Dimensional Gas Chromatography Mass Spectrometry. - Seongho Kim; Xiang Zhang 003 (Comput. Math. Methods Medicine, 2013)

Comparative analysis of false discovery rate methods in constructing metabolic association networks. - Imhoi Koo; Sen Yao; Xiang Zhang 003; Seongho Kim (J. Bioinform. Comput. Biol., 2014)

Metabolic Network Construction Using Ensemble Algorithms. - Seongho Kim; Joohyoung Lee; Hyejeong Jang; Xiang Zhang 003 (BICT, 2015)

Combine multiple mass spectral similarity measures for compound identification. - Jun Zhang 011; Yi Xia; Chun-Hou Zheng 001; Bing Wang 004; Xiang Zhang 003; Peng Chen 001 (Int. J. Data Min. Bioinform., 2016)

Global peak alignment for comprehensive two-dimensional gas chromatography mass spectrometry using point matching algorithms. - Beichuan Deng; Seongho Kim; Hengguang Li; Elisabeth Heath; Xiang Zhang 003 (J. Bioinform. Comput. Biol., 2016)

An ensemble feature selection method for biomarker discovery. - Aliasghar Shahrjooihaghighi; Hichem Frigui; Xiang Zhang 003; Xiaoli Wei; Biyun Shi; Ameni Trabelsi (ISSPIT, 2017)

Normal-Gamma-Bernoulli peak detection for analysis of comprehensive two-dimensional gas chromatography mass spectrometry data. - Seongho Kim; Hyejeong Jang; Imhoi Koo; Joohyoung Lee; Xiang Zhang 003 (Comput. Stat. Data Anal., 2017)

Ensemble feature selection for biomarker discovery in mass spectrometry-based metabolomics. - Aliasghar Shahrjooihaghighi; Hichem Frigui; Xiang Zhang 003; Xiaoli Wei; Biyun Shi; Craig J. McClain (SAC, 2019)

Molecule specific normalization for protein and metabolite biomarker discovery. - Ameni Trabelsi; Biyun Shi; Xiaoli Wei; Hichem Frigui; Xiang Zhang 003; Craig McClain; Aliasghar Shahrjooihaghighi (SAC, 2019)