ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing. - Zhi Jin; Sheng Xu; Xiang Zhang 028; Tianze Ling; Nanqing Dong; Wanli Ouyang; Zhiqiang Gao; Cheng Chang; Siqi Sun (AAAI, 2024)

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing. - Zijie Qiu; Jiaqi Wei; Xiang Zhang 028; Sheng Xu; Kai Zou; Zhi Jin; Zhiqiang Gao; Nanqing Dong; Siqi Sun (CoRR, 2025)

Curriculum Learning for Biological Sequence Prediction: The Case of De Novo Peptide Sequencing. - Xiang Zhang 028; Jiaqi Wei; Zijie Qiu; Sheng Xu; Nanqing Dong; Zhiqiang Gao; Siqi Sun (CoRR, 2025)

Bidirectional Representations Augmented Autoregressive Biological Sequence Generation:Application in De Novo Peptide Sequencing. - Xiang Zhang 028; Jiaqi Wei; Zijie Qiu; Sheng Xu; Zhi Jin; Zhiqiang Gao; Nanqing Dong; Siqi Sun (CoRR, 2025)