RNA-combine: a toolkit for comprehensive analyses on transcriptome data from different sequencing platforms. - Xuemin Dong; Shanshan Dong; Shengkai Pan; Xiangjiang Zhan (BMC Bioinform., 2022)

stemflow: A Python Package for Adaptive Spatio-Temporal Exploratory Model. - Yangkang Chen; Zhongru Gu; Xiangjiang Zhan (J. Open Source Softw., 2024)