Experimental Designs and ANOVA for Microarray Data. - Richard E. Kennedy; Xiangqin Cui (Handbook of Statistical Bioinformatics, 2011)

Design and validation issues in RNA-seq experiments. - Zhide Fang; Xiangqin Cui (Briefings Bioinform., 2011)

Length bias correction for RNA-seq data in gene set analyses. - Liyan Gao; Zhide Fang; Kui Zhang; Degui Zhi; Xiangqin Cui (Bioinform., 2011)

BCRgt: a Bayesian cluster regression-based genotyping algorithm for the samples with copy number alterations. - Shengping Yang; Xiangqin Cui; Zhide Fang (BMC Bioinform., 2014)

Negative binomial mixed models for analyzing microbiome count data. - Xinyan Zhang; Himel Mallick; Zaixiang Tang; Lei Zhang; Xiangqin Cui; Andrew K. Benson; Nengjun Yi (BMC Bioinform., 2017)