Computing the relative binding affinity of ligands based on a pairwise binding comparison network. - Jie Yu; Zhaojun Li; Geng Chen; Xiangtai Kong; Jie Hu; Dingyan Wang; Duanhua Cao; Yanbei Li; Ruifeng Huo; Gang Wang; Xiaohong Liu 002; Hualiang Jiang; et al. (Nat. Comput. Sci., 2023)

Tora3D: an autoregressive torsion angle prediction model for molecular 3D conformation generation. - Zimei Zhang; Gang Wang; Rui Li; Lin Ni; Runze Zhang; Kaiyang Cheng; Qun Ren; Xiangtai Kong; Shengkun Ni; Xiaochu Tong; Li Luo; Dingyan Wang; et al. (J. Cheminformatics, 2023)

KinomeMETA: meta-learning enhanced kinome-wide polypharmacology profiling. - Qun Ren; Ning Qu; Jingjing Sun; Jingyi Zhou; Jin Liu; Lin Ni; Xiaochu Tong; Zimei Zhang; Xiangtai Kong; Yiming Wen; Yitian Wang; Dingyan Wang; et al. (Briefings Bioinform., 2024)

TG468: a text graph convolutional network for predicting clinical response to immune checkpoint inhibitor therapy. - Kun Wang; Jiangshan Shi; Xiaochu Tong; Ning Qu; Xiangtai Kong; Shengkun Ni; Jing Xing; Xutong Li; Mingyue Zheng (Briefings Bioinform., 2024)

miCGR: interpretable deep neural network for predicting both site-level and gene-level functional targets of microRNA. - Xiaolong Wu; Lehan Zhang; Xiaochu Tong; Yitian Wang; Zimei Zhang; Xiangtai Kong; Shengkun Ni; Xiaomin Luo; Mingyue Zheng; Yun Tang 001; Xutong Li (Briefings Bioinform., 2024)