Analysis of protein sequence similarity. - Yusen Zhang 002; Xiangtian Yu (BIC-TA, 2010)

Identifying critical transitions of complex diseases based on a single sample. - Rui Liu 009; Xiangtian Yu; Xiaoping Liu 002; Dong Xu 002; Kazuyuki Aihara; Luonan Chen (Bioinform., 2014)

Prediction and early diagnosis of complex diseases by edge-network. - Xiangtian Yu; Guojun Li; Luonan Chen (Bioinform., 2014)

Integration of multiple heterogeneous omics data. - Chuanchao Zhang; Juan Liu 007; Qianqian Shi; Xiangtian Yu; Tao Zeng 003; Luonan Chen (BIBM, 2016)

Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals. - Tao Zeng 003; Wanwei Zhang; Xiangtian Yu; Xiaoping Liu 002; Meiyi Li; Luonan Chen (Briefings Bioinform., 2016)

Mining K-mers of Various Lengths in Biological Sequences. - Jingsong Zhang; Jianmei Guo; Xiaoqing Yu; Xiangtian Yu; Weifeng Guo; Tao Zeng 003; Luonan Chen (ISBRA, 2017)

Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data. - Qianqian Shi; Chuanchao Zhang; Minrui Peng; Xiangtian Yu; Tao Zeng 003; Juan Liu 007; Luonan Chen (Bioinform., 2017)

Quantifying critical states of complex diseases using single-sample dynamic network biomarkers. - Xiaoping Liu 002; Xiao Chang; Rui Liu 009; Xiangtian Yu; Luonan Chen; Kazuyuki Aihara (PLoS Comput. Biol., 2017)

Characterizing and Discriminating Individual Steady State of Disease-Associated Pathway. - Shaoyan Sun; Xiangtian Yu; Fengnan Sun; Ying Tang; Juan Zhao; Tao Zeng 003 (ICIC (1), 2018)

Dynamically characterizing individual clinical change by the steady state of disease-associated pathway. - Shaoyan Sun; Xiangtian Yu; Fengnan Sun; Ying Tang; Juan Zhao; Tao Zeng 003 (BMC Bioinform., 2019)

Identifying Essential Methylation Patterns and Genes Associated With Stroke. - Xiangtian Yu; Zijun Gan; Yan Xu; Sibao Wan; Min Li; Shijian Ding; Tao Zeng 003 (IEEE Access, 2020)

Efficient Mining Multi-Mers in a Variety of Biological Sequences. - Jingsong Zhang; Jianmei Guo; Ming Zhang; Xiangtian Yu; Xiaoqing Yu; Weifeng Guo; Tao Zeng 003; Luonan Chen (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Performance assessment of sample-specific network control methods for bulk and single-cell biological data analysis. - Weifeng Guo; Xiangtian Yu; Qianqian Shi; Jing Liang 005; Shao-Wu Zhang 001; Tao Zeng 003 (PLoS Comput. Biol., 2021)

Vec2image: an explainable artificial intelligence model for the feature representation and classification of high-dimensional biological data by vector-to-image conversion. - Hui Tang; Xiangtian Yu; Rui Liu 009; Tao Zeng 003 (Briefings Bioinform., 2022)

3MCor: an integrative web server for metabolome-microbiome-metadata correlation analysis. - Tao Sun; Mengci Li; Xiangtian Yu; Dandan Liang; Guoxiang Xie; Chao Sang; Wei Jia 002; Tianlu Chen (Bioinform., 2022)

DRLLog: Deep Reinforcement Learning for Online Log Anomaly Detection. - Junwei Zhou 002; Yuyang Gao; Ying Zhu; Xiangtian Yu; Yanchao Yang 002; Cheng Tan; Jianwen Xiang (IEEE Trans. Netw. Serv. Manag., 2025)