A Coordination Architecture for Distributed Autonomous Control Systems. - Xianjun Shen; Ronaldo Menezes; Hector Gutierrez (PDPTA, 2002)

General Particle Swarm Optimization Based on Simulated Annealing for Multi-specification One-Dimensional Cutting Stock Problem. - Xianjun Shen; Yuanxiang Li 001; Bojin Zheng; Zhifeng Dai (CIS, 2006)

A New Dynamic Particle Swarm Optimizer. - Binbin Zheng; Yuanxiang Li 001; Xianjun Shen; Bojin Zheng (SEAL, 2006)

A Distributed Coordination Framework for Adaptive Sensor Uncertainty Handling. - Zhifeng Dai; Yuanxiang Li 001; Bojin Zheng; Xianjun Shen (International Conference on Computational Science (4), 2007)

Theory of Evolutionary Algorithm: A View from Thermodynamics. - Yuanxiang Li 001; Weiwu Wang; Xianjun Shen; Weiqin Ying; Bojin Zheng (International Conference on Computational Science (4), 2007)

A Heuristic Particle Swarm Optimization for Cutting Stock Problem Based on Cutting Pattern. - Xianjun Shen; Yuanxiang Li; Jincai Yang; Li Yu (International Conference on Computational Science (4), 2007)

An Improved Threshold Selection Algorithm Based on Particle Swarm Optimization for Image Segmentation. - Kaiping Wei; Tao Zhang; Xianjun Shen; Jingnan Liu (ICNC (5), 2007)

A New Dynamical Particle Swarm Optimization Based on Principle Free Entropy Minimization. - Xianjun Shen; Fan Chen; Tingting He; Zhifeng Chi; Caixia Chen (ICNC (5), 2009)

Hidden Tree Structure is a Key to the Emergence of Scaling in the World Wide Web - Bojin Zheng; Jianmin Wang 001; Guisheng Chen; Jian Jiang; Xianjun Shen (CoRR, 2011)

Greedy continuous particle swarm optimisation algorithm for the knapsack problems. - Xianjun Shen; Yanan Li; Caixia Chen; Jincai Yang; Dabin Zhang (Int. J. Comput. Appl. Technol., 2012)

Mining protein complexes based on connected affinity clique extension. - Peng Li; Xiaohua Hu 001; Tingting He 003; Junmin Zhao; Ming Zhang 004; Xianjun Shen (BIBM, 2013)

Protein functional module detection based on closely associated degree. - Xianjun Shen; Xiaohui Chen; Rui Xu 019; Tingting He 003; Jincai Yang; Xiaohua Hu 001 (BIBM, 2013)

Identification of essential proteins based on network capital assessment and invalidating protein node. - Xianjun Shen; Rui Xu 019; Xiaohui Chen; Jincai Yang; Tingting He 003 (BIBM, 2013)

An efficient protein complex mining algorithm based on multistage kernel extension. - Xianjun Shen; Yanli Zhao; Yanan Li; Tingting He; Jincai Yang (BIBM, 2013)

An integrated approach to identify protein complex based on best neighbor and modularity increment. - Xianjun Shen; Yanli Zhao; Yanan Li; Jincai Yang; Tingting He 003; Xiaohua Hu 001 (BIBM, 2013)

A novel protein complex identification algorithm based on gene co-expression (PCIA-GeCo). - Junmin Zhao; Xiaohua Hu 001; Tingting He 003; Peng Li; Ming Zhang 004; Xianjun Shen (BIBM, 2013)

Prioritizing disease-causing genes based on network diffusion and rank concordance. - Minghong Fang; Xiaohua Hu 001; Tingting He 003; Yan Wang; Junmin Zhao; Xianjun Shen; Jie Yuan (BIBM, 2014)

A novel approach to breast cancer-related disease genes discovered through variation of density modularity. - Xianjun Shen; Yang Yi; Yan Wang; Xiaohui Chen; Jincai Yang; Tingting He (BIBM, 2014)

Microbiome dynamics analysis using a novel multivariate vector autoregression model with weighted fusion regularization. - Yan Wang; Xingpeng Jiang; Xiaohua Hu 001; Tingting He 003; Xianjun Shen; Jie Yuan (BIBM, 2014)

A novel disease gene prediction method based on PPI network. - Junmin Zhao; Tingting He 003; Xiaohua Hu 001; Yan Wang; Xianjun Shen; Minghong Fang; Jie Yuan (BIBM, 2014)

An efficient protein complex mining algorithm based on Multistage Kernel Extension. - Xianjun Shen; Yanli Zhao; Yanan Li; Tingting He 003; Jincai Yang; Xiaohua Hu 001 (BMC Bioinform., 2014)

Essential protein discovery based on network node correlation and invalidating protein node. - Wenjie Hu; Xianjun Shen; Rui Xu 019 (BIBM, 2015)

Detecting temporal protein complexes based on Neighbor Closeness and time course protein interaction networks. - Xianjun Shen; Yi Li; Xingpeng Jiang; Yanli Zhao; Tingting He 003; Jincai Yang (BIBM, 2015)

Face detection based on particle swarm optimisation-free entropy minimisation. - Xianjun Shen; Yang Yi; Wenyong Dong; Shuaiyu Guo; Junyan Li; Fan Chen (Int. J. Comput. Sci. Math., 2015)

An integrated approach to identify protein complex based on best neighbour and modularity increment. - Xianjun Shen; Yanli Zhao; Yanan Li; Yang Yi; Tingting He; Jincai Yang (Int. J. Data Min. Bioinform., 2015)

Weighted fusion regularisation and predicting microbial interactions with vector autoregressive model. - Yan Wang; Tingting He 003; Xingpeng Jiang; Jie Yuan; Xianjun Shen (Int. J. Data Min. Bioinform., 2015)

基于贝叶斯模型的复句关系词自动识别与规则挖掘 (Automatic Identification and Rule Mining for Relation Words of Chinese Compound Sentences Based on Bayesian Model). - Jincai Yang; Kaikai Guo; Xianjun Shen; Jinzhu Hu (计算机科学, 2015)

Dynamic identifying protein functional modules based on adaptive density modularity in protein-protein interaction networks. - Xianjun Shen; Li Yi; Yang Yi; Jincai Yang; Tingting He 003; Xiaohua Hu 001 (BMC Bioinform., 2015)

Predicting disease-microbe association by random walking on the heterogeneous network. - Xianjun Shen; Yao Chen; Xingpeng Jiang; Xiaohua Hu 001; Tingting He 003; Jincai Yang (BIBM, 2016)

A novel identified temporal protein complexes strategy inspired by density-distance and brainstorming process. - Xianjun Shen; Jin Zhou; Xingpeng Jiang; Xiaohua Hu 001; Tingting He 003; Jincai Yang; Dan Xie (BIBM, 2016)

Walking in the PPI network to identify the risky SNP of osteoporosis with decision tree algorithm. - Jincai Yang; Huichao Gu; Xingpeng Jiang; Qingyang Huang; Xiaohua Hu 001; Xianjun Shen (BIBM, 2016)

A novel proteins complex identification based on connected affinity and multi-level seed extension. - Tingting He 003; Peng Li; Xiaohua Hu 001; Xianjun Shen; Yan Wang; Junmin Zhao (Int. J. Data Min. Bioinform., 2016)

Mobile nodes localisation based on hill climbing optimisation. - Wenjie Hu; Yao Chen; Jincai Yang; Xianjun Shen (Int. J. Wirel. Mob. Comput., 2016)

Visualization of disease relationships by multiple maps t-SNE regularization based on Nesterov accelerated gradient. - Xianjun Shen; Xianchao Zhu; Xingpeng Jiang; Tingting He 003; Xiaohua Hu 001 (BIBM, 2017)

Systematic characterization and prediction of tumor-associated genes in mouse using microrna. - Jincai Yang; Chunjie Guo; Xingpeng Jiang; Xiaohua Hu 001; Xianjun Shen (BIBM, 2017)

Classify and identify the risky loci of type 2 diabetes with computational method. - Jincai Yang; Fuli Zhang; Xingpeng Jiang; Xianjun Shen; Xiaohua Hu 001 (BIBM, 2017)

Visualization of non-metric relationships by adaptive learning multiple maps t-SNE regularization. - Xianjun Shen; Xianchao Zhu; Xingpeng Jiang; Li Gao; Tingting He 003; Xiaohua Hu 001 (IEEE BigData, 2017)

Identifying the Risky SNP of Osteoporosis with ID3-PEP Decision Tree Algorithm. - Jincai Yang; Huichao Gu; Xingpeng Jiang; Qingyang Huang; Xiaohua Hu 001; Xianjun Shen (Complex., 2017)

基于汉语复句的语义相关度计算及类别的标识 (Word Semantic Relevancy Computation and Categories Identification Based on Chinese Compound Sentences). - Jincai Yang; Zhongzhong Chen; Xianjun Shen; Jinzhu Hu (计算机科学, 2017)

High-order Organization of Weighted Microbial Interaction Network. - Xianjun Shen; Xue Gong; Xingpeng Jiang; Jincai Yang; Tingting He 003; Xiaohua Hu 001 (BIBM, 2018)

A Novel Approach Based on Bi-Random Walk to Predict Microbe-Disease Associations. - Xianjun Shen; Huan Zhu; Xingpeng Jiang; Xiaohua Hu 001; Jincai Yang (ICIC (3), 2018)

Nonlinear expression and visualization of nonmetric relationships in genetic diseases and microbiome data. - Xianchao Zhu; Xianjun Shen; Xingpeng Jiang; Kaiping Wei; Tingting He 003; Yuanyuan Ma; Jiaqi Liu; Xiaohua Hu 001 (BMC Bioinform., 2018)

Hypergraph Clustering Based on Intra-class Scatter Matrix for Mining Higher-order Microbial Module. - Limin Yu; Xianjun Shen; Xingpeng Jiang; Jincai Yang; Yujuan Yang; Duo Zhong (BIBM, 2019)

The Classification of Chinese Sensitive Information Based on BERT-CNN. - Yujie Wang; Xianjun Shen; Yujuan Yang (ISICA, 2019)

BERT-BiLSTM-CRF for Chinese Sensitive Vocabulary Recognition. - Yujuan Yang; Xianjun Shen; Yujie Wang (ISICA, 2019)

基于神经网络的关系词非充盈态复句层次的自动识别 (Hierarchy Division of Compound Sentence with Non-saturated Relation Word via Neural Network). - Jincai Yang; Lulu Yang; Yanyan Wang; Xianjun Shen (计算机科学, 2019)

Categorizing Offensive Language in Social Networks: A Chinese Corpus, Systems and an Explanation Tool. - Xiangru Tang; Xianjun Shen; Yujie Wang; Yujuan Yang (CNCL, 2020)

A Simplex Hypergraph Clustering Method for Detecting Higher-order Modules in Microbial Network. - Ruilong Xiang; Lingling Fu; Yue Wang; Han Sun; Xianjun Shen (BIBM, 2021)

Inferring microbe-metabolite interactions by heterogeneous network fusion based on graph convolution network. - Pei Li; Ying Xiao; Weizhong Zhao; Xingpeng Jiang; Xianjun Shen (BIBM, 2022)

Predicting human microbe-disease associations based on multi-source heterogeneous graph representation learning model. - Haodong Wang; Han Sun; Yue Wang; Weizhong Zhao; Xingpeng Jiang; Xianjun Shen (BIBM, 2022)

MPGNN-DSA: A Meta-path-based Graph Neural Network for drug-side effect association prediction. - Wenjie Yao; Weizhong Zhao; Xingpeng Jiang; Xianjun Shen; Tingting He 003 (BIBM, 2022)

A Novel Drug Repositioning Model Based on Heterogeneous Graph Convolutional Network via Multi-task Learning. - Shengwei Ye; Weizhong Zhao; Xianjun Shen; Xingpeng Jiang; Tingting He 003 (BIBM, 2022)

Prediction of Drug-Drug Interactions Based on Meta-path-based Fusion Mechanism in Heterogeneous Information Network. - Xueling Yuan; Weizhong Zhao; Xianjun Shen; Xingpeng Jiang; Tingting He 003 (BIBM, 2022)

Counterfactual Inference-based Data Augmentation for Drug-side effect Associations Prediction. - Wenjie Yao; Weizhong Zhao; Xiaowei Xu 001; Xingpeng Jiang; Xianjun Shen; Tingting He 003 (BIBM, 2023)

Effective Drug Repositioning with a Novel Negative Sample Selection Algorithm. - Shengwei Ye; Weizhong Zhao; Xiaowei Xu 001; Xianjun Shen; Xingpeng Jiang; Tingting He 003 (BIBM, 2023)

An Effective Microbial-drug Relation Extraction Model Based on Dual Graph Convolutional Networks. - Ruizhe Zhang 014; Dandan Li; Ying Xiao; Weizhong Zhao; Xingpeng Jiang; Xianjun Shen (BIBM, 2023)

Improving drug-drug interactions prediction with interpretability via meta-path-based information fusion. - Weizhong Zhao; Xueling Yuan; Xianjun Shen; Xingpeng Jiang; Chuan Shi 001; Tingting He 003; Xiaohua Hu 001 (Briefings Bioinform., 2023)

An Effective Model for Predicting Phage-Host Interactions Via Graph Embedding Representation Learning With Multi-Head Attention Mechanism. - Yue Wang 103; Han Sun; Haodong Wang; Dandan Li; Weizhong Zhao; Xingpeng Jiang; Xianjun Shen (IEEE J. Biomed. Health Informatics, 2023)

Predicting Microbe-Disease Association Based on Enhanced Relational Graph Convolutional Networks. - Song Jiang 001; Haodong Wang; Yue Huang; Weizhong Zhao; Xianjun Shen (BIBM, 2024)

A Multimodal Joint Representation Framework for Microbe-drug Association Prediction. - Ruizhe Zhang 014; Yiting Shen; Chenlian Zhou; Weizhong Zhao; Xianjun Shen (BIBM, 2024)

A Novel Combined Embedding Model Based on Heterogeneous Network for Inferring Microbe-Metabolite Interactions. - Xinzi Chen; Pei Li; Weizhong Zhao; Xingpeng Jiang; Xianjun Shen (ISBRA (1), 2024)

Prediction of Drug-Disease Associations Based on Multi-Kernel Deep Learning Method in Heterogeneous Graph Embedding. - Dandan Li; Zhen Xiao; Han Sun; Xingpeng Jiang; Weizhong Zhao; Xianjun Shen (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)