Tumor Tissue Segmentation for Histopathological Images. - Xiansong Huang; Hongliang He; Pengxu Wei; Chi Zhang; Juncen Zhang; Jie Chen 001 (MMAsia, 2019)

Learning Erosional Probability Maps for Nuclei Instance Segmentation. - Zhongyi Huang; Yao Ding 006; Ruizhe Geng; Hongliang He; Xiansong Huang; Jie Chen 001 (MIPR, 2020)

OpenMedIA: Open-Source Medical Image Analysis Toolbox and Benchmark Under Heterogeneous AI Computing Platforms. - Jia-Xin Zhuang; Xiansong Huang; Yang Yang 002; Jiancong Chen; Yue Yu 001; Wei Gao 003; Ge Li 002; Jie Chen 001; Tong Zhang 017 (PRCV (1), 2022)

Running ahead of evolution - AI-based simulation for predicting future high-risk SARS-CoV-2 variants. - Jie Chen 001; Zhiwei Nie; Yu Wang; Kai Wang; Fan Xu; Zhiheng Hu; Bing Zheng; Zhennan Wang 001; Guoli Song; Jingyi Zhang; Jie Fu 001; Xiansong Huang; et al. (Int. J. High Perform. Comput. Appl., 2023)

Introducing π-HelixNovo for practical large-scale de novo peptide sequencing. - Tingpeng Yang; Tianze Ling; Boyan Sun; Zhendong Liang; Fan Xu; Xiansong Huang; Linhai Xie; Yonghong He; Leyuan Li; Fuchu He; Yu Wang; Cheng Chang (Briefings Bioinform., 2024)

Generative prediction of real-world prevalent SARS-CoV-2 mutation with in silico virus evolution. - Xudong Liu; Zhiwei Nie; Haorui Si; Xurui Shen; Yutian Liu 004; Xiansong Huang; Tianyi Dong; Fan Xu; Zhixiang Ren; Peng Zhou; Jie Chen 001 (Briefings Bioinform., 2025)

Predicting protein stability changes upon mutations with dual-view ensemble learning from single sequence. - Zhiwei Nie; Yiming Ma; Yutian Liu 004; Xiansong Huang; Zhihong Liu; Peng Yang 001; Fan Xu; Feng Yin; Zigang Li; Jie Fu 001; Zhixiang Ren; Wen-Bin Zhang; et al. (Briefings Bioinform., 2025)

A Unified Peptide Generative Framework via a Weakly Order-Dependent Autoregressive Language Model and Lifelong Learning. - Zhiwei Nie; Daixi Li; Yutian Liu; Fan Xu; Hongyu Zhang; Xiansong Huang; Xudong Liu; Zhennan Wang; Yiming Ma; Yuxin Ye; Feng Yin; Wen-Bin Zhang; et al. (J. Chem. Inf. Model., 2025)

OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional deep learning. - Zhiwei Nie; Hongyu Zhang 002; Hao Jiang; Yutian Liu 004; Xiansong Huang; Fan Xu; Jie Fu 001; Zhixiang Ren; Yonghong Tian 001; Wen-Bin Zhang; Jie Chen 001 (CoRR, 2025)