Support vector machine for classification of meiotic recombination hotspots and coldspots in Saccharomyces cerevisiaebased on codon composition. - Tong Zhou; Jianhong Weng; Xiao Sun 006; Zuhong Lu (BMC Bioinform., 2006)

Informational Structure of Agrobacterium Tumefaciens C58 Genome. - Zhihua Liu; Xiao Sun 006 (LSMS (2), 2007)

Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes. - Jiansheng Wu; Hongtao Wu; Hongde Liu; Haoyan Zhou; Xiao Sun 006 (LSMS (2), 2007)

Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers. - Xinan Yang; Xiao Sun 006 (BMC Bioinform., 2007)

RFRCDB-siRNA: Improved design of siRNAs by random forest regression model coupled with database searching. - Peng Jiang; Haonan Wu; Yao Da; Fei Sang; Jiawei Wei; Xiao Sun 006; Zuhong Lu (Comput. Methods Programs Biomed., 2007)

MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. - Peng Jiang; Haonan Wu; Wenkai Wang; Wei Ma; Xiao Sun 006; Zuhong Lu (Nucleic Acids Res., 2007)

RF-DYMHC: detecting the yeast meiotic recombination hotspots and coldspots by random forest model using gapped dinucleotide composition features. - Peng Jiang; Haonan Wu; Jiawei Wei; Fei Sang; Xiao Sun 006; Zuhong Lu (Nucleic Acids Res., 2007)

Comparability of gene expression in human blood, immune and carcinoma cells. - Xinan Yang; Xiao Sun 006; Jianming Xie; Zuhong Lu (Appl. Math. Comput., 2008)

Coronavirus phylogeny based on Base-Base Correlation. - Zhihua Liu; Xiao Sun 006 (Int. J. Bioinform. Res. Appl., 2008)

A Hybrid Approach for Biomedical Entity Name Recognition. - Lejun Gong; Yi Yuan; You-Bing Wei; Xiao Sun 006 (BMEI, 2009)

SVM-Based Approach for Predicting DNA-Binding Residues in Proteins from Amino Acid Sequences. - Xin Ma 003; Jiansheng Wu; Hongde Liu; Xinan Yang; Jianming Xie; Xiao Sun 006 (IJCBS, 2009)

Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature. - Jiansheng Wu; Hongde Liu; Xueye Duan; Yan Ding; Hongtao Wu; Yunfei Bai; Xiao Sun 006 (Bioinform., 2009)

Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. - Xinan Yang; Yong Huang; James L. Chen; Jianming Xie; Xiao Sun 006; Yves A. Lussier (BMC Bioinform., 2009)

ATRMiner : A system for automatic biomedical named entities recognition. - Lejun Gong; Xiao Sun 006 (ICNC, 2010)

Nucleosomes Are Well Positioned at Both Ends of Exons. - Hongde Liu; Xiao Sun 006 (LSMS/ICSEE, 2010)

Role of 10-11 bp periodicities of eukaryotic DNA sequence in nucleosome positioning. - Hongde Liu; Shuhai Lin; Zongwei Cai; Xiao Sun 006 (Biosyst., 2011)

Next-generation sequencing data processing: Analysis of unmapped reads and extremely high mapped peaks. - Jiao Chen; ZuoLei Dai; Chang-Chang Cao; Qianqian Zhang; Hongde Liu; Xiao Sun 006 (BMEI, 2012)

Nucleosome organization in sequences of alternative events in human genome. - Huan Huang; Shuangxin Yu; Hongde Liu; Xiao Sun 006 (Biosyst., 2012)

Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information. - Xin Ma 003; Jing Guo; Hongde Liu; Jianming Xie; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Target Identification and Target-centered Network Construction from Biomedical Literature. - Lejun Gong; Yunyang Yan; Xiao Sun 006 (J. Softw., 2013)

Prioritization of Disease Susceptibility Genes Using LSM/SVD. - Lejun Gong; Ronggen Yang; Qin Yan; Xiao Sun 006 (IEEE Trans. Biomed. Eng., 2013)

Quantitative group testing-based overlapping pool sequencing to identify rare variant carriers. - Chang-Chang Cao; Cheng Li; Xiao Sun 006 (BMC Bioinform., 2014)

Accurate estimation of haplotype frequency from pooled sequencing data and cost-effective identification of rare haplotype carriers by overlapping pool sequencing. - Chang-Chang Cao; Xiao Sun 006 (Bioinform., 2015)

DectICO: an alignment-free supervised metagenomic classification method based on feature extraction and dynamic selection. - Xiao Ding; Fudong Cheng; Chang-Chang Cao; Xiao Sun 006 (BMC Bioinform., 2015)

PRBP: Prediction of RNA-Binding Proteins Using a Random Forest Algorithm Combined with an RNA-Binding Residue Predictor. - Xin Ma 003; Jing Guo; Ke Xiao; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Ehapp2: Estimate haplotype frequencies from pooled sequencing data with prior database information. - Chang-Chang Cao; Xiao Sun 006 (J. Bioinform. Comput. Biol., 2016)

Combinatorial pooled sequencing: experiment design and decoding. - Chang-Chang Cao; Xiao Sun 006 (Quant. Biol., 2016)

Comparison of the experimental methods in haplotype sequencing via next generation sequencing. - Jing Tu; Na Lu; Mengqin Duan; An Ju; Xiao Sun 006; Zuhong Lu (Quant. Biol., 2016)

Histone modifications influence skipped exons inclusion. - Yue Hou; Huan Huang; Wenqiao Hu; Hongde Liu; Xiao Sun 006 (J. Bioinform. Comput. Biol., 2017)

Prediction of microRNA-binding residues in protein using a Laplacian support vector machine based on sequence information. - Xin Ma 003; Jing Guo; Xiao Sun 006 (J. Bioinform. Comput. Biol., 2018)

Nucleosome Positioning of Intronless Genes in the Human Genome. - Xiangfei Cheng; Yue Hou; Yumin Nie; Yiru Zhang; Huan Huang; Hongde Liu; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

DNMHMM: An approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model. - Jiahao Xie; Yiran Cai; Huamei Li; Jiahui Wu; Xinlei Zhao; Kun Luo; Amit Sharma; Jianming Xie; Xiao Sun 006; Hongde Liu (Biosyst., 2019)

A Comparative Study of Network Motifs in the Integrated Transcriptional Regulation and Protein Interaction Networks of Shewanella. - Dewu Ding; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Sample-specific perturbation of gene interactions identifies breast cancer subtypes. - Yuanyuan Chen; Yu Gu; Zixi Hu; Xiao Sun 006 (Briefings Bioinform., 2021)

Classification of Mild Cognitive Impairment With Multimodal Data Using Both Labeled and Unlabeled Samples. - Shaoxun Yuan; Haitao Li 004; Jiansheng Wu; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Predicting hormone receptors and PAM50 subtypes of breast cancer from multi-scale lesion images of DCE-MRI with transfer learning technique. - Wenlong Ming; Fuyu Li; Yanhui Zhu; Yunfei Bai; Wanjun Gu; Yun Liu 020; Xiao Sun 006; Xiaoan Liu; Hongde Liu (Comput. Biol. Medicine, 2022)

Relating Translation Efficiency to Protein Networks Provides Evolutionary Insights in Shewanella and Its Implications for Extracellular Electron Transfer. - Dewu Ding; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Improving the performance of single-cell RNA-seq data mining based on relative expression orderings. - Yuanyuan Chen; Hao Zhang; Xiao Sun 006 (Briefings Bioinform., 2023)

scAnno: a deconvolution strategy-based automatic cell type annotation tool for single-cell RNA-sequencing data sets. - Hongjia Liu; Huamei Li; Amit Sharma; Wenjuan Huang; Duo Pan; Yu Gu; Lu Lin; Xiao Sun 006; Hongde Liu (Briefings Bioinform., 2023)