Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network. - Xiao Wang 031; Jinghua Gu; Jianhua Xuan; Ayesha N. Shajahan; Robert Clarke; Li Chen 018 (ICMLA (2), 2012)

Reconstructing transcriptional regulatory networks by probabilistic network component analysis. - Jinghua Gu; Jianhua Xuan; Xiao Wang 031; Ayesha N. Shajahan; Leena Hilakivi-Clarke; Robert Clarke (BCB, 2013)

A Markov random field-based Bayesian model to identify genes with differential methylation. - Xiao Wang 031; Jinghua Gu; Jianhua Xuan; Robert Clarke; Leena Hilakivi-Clarke (CIBCB, 2014)

BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data. - Jinghua Gu; Xiao Wang 031; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (BMC Bioinform., 2014)

DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency. - Xiao Wang 031; Jinghua Gu; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (Bioinform., 2017)

CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data. - Xi Chen 056; Jinghua Gu; Xiao Wang 031; Jin-Gyoung Jung; Tian-Li Wang; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (Bioinform., 2018)

SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data. - Xu Shi; Xiao Wang 031; Tian-Li Wang; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (Bioinform., 2018)

Tracking Multiple Moving Objects Using Unscented Kalman Filtering Techniques. - Xi Chen 056; Xiao Wang 031; Jianhua Xuan (CoRR, 2018)

IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles. - Xu Shi; Andrew F. Neuwald; Xiao Wang 031; Tian-Li Wang; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (Bioinform., 2021)

Bayesian identification of differentially expressed isoforms using a novel joint model of RNA-seq data. - Xu Shi; Xiao Wang 031; Lu Jin; Leena Halakivi-Clarke; Robert Clarke; Andrew F. Neuwald; Jianhua Xuan (PLoS Comput. Biol., 2025)