PARALLEL-TCOFFEE: A parallel multiple sequence aligner. - Jaroslaw Zola; Xiao Yang 019; Adrian Rospondek; Srinivas Aluru (PDCS, 2007)

An Improved Model for Gene Cluster Inference. - Xiao Yang 019; Srinivas Aluru (BICoB, 2010)

Parallel de novo assembly of large genomes from high-throughput short reads. - Benjamin G. Jackson; Matthew Regennitter; Xiao Yang 019; Patrick S. Schnable; Srinivas Aluru (IPDPS, 2010)

Reptile: representative tiling for short read error correction. - Xiao Yang 019; Karin S. Dorman; Srinivas Aluru (Bioinform., 2010)

Workshop: Flexible read decomposition for improved short read error correction. - Xiao Yang 019; Karin S. Dorman; Srinivas Aluru (ICCABS, 2011)

Parallel Metagenomic Sequence Clustering Via Sketching and Maximal Quasi-clique Enumeration on Map-Reduce Clouds. - Xiao Yang 019; Jaroslaw Zola; Srinivas Aluru (IPDPS, 2011)

Repeat-aware modeling and correction of short read errors. - Xiao Yang 019; Srinivas Aluru; Karin S. Dorman (BMC Bioinform., 2011)

An Algorithmic View on Multi-Related-Segments: A Unifying Model for Approximate Common Interval. - Xiao Yang 019; Florian Sikora; Guillaume Blin; Sylvie Hamel; Romeo Rizzi; Srinivas Aluru (TAMC, 2012)

A survey of error-correction methods for next-generation sequencing. - Xiao Yang 019; Sriram P. Chockalingam; Srinivas Aluru (Briefings Bioinform., 2013)

Large-Scale metagenomic sequence Clustering on Map-Reduce Clusters. - Xiao Yang 019; Jaroslaw Zola; Srinivas Aluru (J. Bioinform. Comput. Biol., 2013)

A Survey of Deep Learning in Histopathological Nuclear Segmentation. - Lulu Qin; Xiao Yang 019; Xianhong Xu; Zexuan Zhu (IEEE Comput. Intell. Mag., 2025)