FGF: A web tool for Fishing Gene Family in a whole genome database. - Hongkun Zheng; Junjie Shi; Xiaodong Fang; Yuan Li; Søren Vang; Wei Fan; Junyi Wang; Zhang Zhang 002; Wen Wang; Karsten Kristiansen; Jun Wang 004 (Nucleic Acids Res., 2007)

BS-SNPer: SNP calling in bisulfite-seq data. - Shengjie Gao; Dan Zou; Likai Mao; Huayu Liu; Pengfei Song; Youguo Chen; Shancen Zhao; Changduo Gao; Xiangchun Li; Zhibo Gao; Xiaodong Fang; Huanming Yang; et al. (Bioinform., 2015)

Eliminating heterozygosity from reads through coverage normalization. - Zicheng Zhao; Yen Kaow Ng; Xiaodong Fang; Shuaicheng Li 001 (BIBM, 2016)

Mr.Vc: a database of microarray and RNA-seq of Vibrio cholerae. - Zhiyuan Zhang; Guozhong Chen; Jun Hu; Wajid Hussain; Fenxia Fan; Yalin Yang; Zhigang Zhou; Xiaodong Fang; Jun Zhu; Wei-Hua Chen; Zhi Liu (Database J. Biol. Databases Curation, 2019)

Using Bayesian network technology to predict the semiconductor manufacturing yield rate in IoT. - Xiaodong Fang; Chan Chang; Genggeng Liu (J. Supercomput., 2021)

Example dataset of stLFR linked reads to run Aquila_stLFR. - Yichen Henry Liu; Griffin L. Grubbs; Lu Zhang; Xiaodong Fang; David L. Dill; Arend Sidow; Xin Zhou (Zenodo, 2021)

Example dataset of stLFR linked reads to run Aquila_stLFR. - Yichen Henry Liu; Griffin L. Grubbs; Lu Zhang; Xiaodong Fang; David L. Dill; Arend Sidow; Xin Zhou (Zenodo, 2021)

Using vendor management inventory system for goods inventory management in IoT manufacturing. - Xiaodong Fang; H.-C. Chen (Enterp. Inf. Syst., 2022)

Sparse Inversion of Aerosol Concentration Distribution Based on LIDAR Remote Sensing. - Weiyi Wang; Dongsheng Yu; Haibo Yu; Minghan Yang; Chidong Xu; Xiaodong Fang (IEEE Access, 2023)

Benchmarking genome assembly methods on metagenomic sequencing data. - Zhenmiao Zhang; Chao Yang; Werner Pieter Veldsman; Xiaodong Fang; Lu Zhang 061 (Briefings Bioinform., 2023)

NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes. - Weiming He; Jian Yang; Yi Jing; Lian Xu; Kang Yu; Xiaodong Fang (Bioinform., 2023)

Benchmarking multi-platform sequencing technologies for human genome assembly. - Jingjing Wang; Werner Pieter Veldsman; Xiaodong Fang; Yufen Huang; Xuefeng Xie; Aiping Lyu; Lu Zhang 061 (Briefings Bioinform., 2023)

A multi-modal deep language model for contaminant removal from metagenome-assembled genomes. - Bohao Zou; Jingjing Wang; Yi Ding; Zhenmiao Zhang; Yufen Huang; Xiaodong Fang; Ka Chun Cheung; Simon See; Lu Zhang 061 (Nat. Mac. Intell., 2024)

VCF2PCACluster: a simple, fast and memory-efficient tool for principal component analysis of tens of millions of SNPs. - Weiming He; Lian Xu; JingXian Wang; Zhen Yue; Yi Jing; Shuaishuai Tai; Jian Yang; Xiaodong Fang (BMC Bioinform., 2024)

Large-scale crop dataset and deep learning-based multi-modal fusion framework for more accurate G×E genomic prediction. - Qixiang Zou; Shuaishuai Tai; Qianguang Yuan; Yating Nie; Heping Gou; Longfei Wang; Chuanxiu Li; Yi Jing; Fangchun Dong; Zhen Yue; Yi Rong; Xiaodong Fang; et al. (Comput. Electron. Agric., 2025)

BioLLM: A standardized framework for integrating and benchmarking single-cell foundation models. - Ping Qiu; Qianqian Chen; Hua Qin; Shuangsang Fang; Yilin Zhang; Yanlin Zhang; Tianyi Xia; Lei Cao; Yong Zhang; Xiaodong Fang; Yuxiang Li; Luni Hu (Patterns, 2025)