Scalable mammogram retrieval using Anchor Graph Hashing. - Jingjing Liu 001; Shaoting Zhang 001; Wei Liu 005; Xiaofan Zhang 002; Dimitris N. Metaxas (ISBI, 2014)

Mining histopathological images via hashing-based scalable image retrieval. - Xiaofan Zhang 002; Wei Liu 005; Shaoting Zhang 001 (ISBI, 2014)

Mining Histopathological Images via Composite Hashing and Online Learning. - Xiaofan Zhang 002; Lin Yang 002; Wei Liu 005; Hai Su; Shaoting Zhang 001 (MICCAI (2), 2014)

Fine-grained histopathological image analysis via robust segmentation and large-scale retrieval. - Xiaofan Zhang 002; Hai Su; Lin Yang 002; Shaoting Zhang 001 (CVPR, 2015)

Weighted Hashing with Multiple Cues for Cell-Level Analysis of Histopathological Images. - Xiaofan Zhang 002; Hai Su; Lin Yang 002; Shaoting Zhang 001 (IPMI, 2015)

Fusing heterogeneous features for the image-guided diagnosis of intraductal breast lesions. - Xiaofan Zhang 002; Hang Dou; Tao Ju; Shaoting Zhang 001 (ISBI, 2015)

Toward consistent cell segmentation: quality assessment of cell segments via appearance and geometry features. - Andrew Brinker; Annika Fredrikson; Xiaofan Zhang 002; Richard Sourvenir; Shaoting Zhang 001 (Digital Pathology, 2015)

High-throughput histopathological image analysis via robust cell segmentation and hashing. - Xiaofan Zhang 002; Fuyong Xing; Hai Su; Lin Yang 002; Shaoting Zhang 001 (Medical Image Anal., 2015)

Towards Large-Scale Histopathological Image Analysis: Hashing-Based Image Retrieval. - Xiaofan Zhang 002; Wei Liu 005; Murat Dundar; Sunil Badve; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2015)

Embedding Label Structures for Fine-Grained Feature Representation. - Xiaofan Zhang 002; Feng Zhou 002; Yuanqing Lin; Shaoting Zhang 001 (CVPR, 2016)

Fusing Heterogeneous Features From Stacked Sparse Autoencoder for Histopathological Image Analysis. - Xiaofan Zhang 002; Hang Dou; Tao Ju; Jun Xu 005; Shaoting Zhang 001 (IEEE J. Biomed. Health Informatics, 2016)

The Sixth Visual Object Tracking VOT2018 Challenge Results. - Matej Kristan; Ales Leonardis; Jiri Matas; Michael Felsberg; Roman P. Pflugfelder; Luka Cehovin Zajc; Tomás Vojír; Goutam Bhat; Alan Lukezic; Abdelrahman Eldesokey; Gustavo Fernández; Álvaro García-Martín; et al. (ECCV Workshops (1), 2018)

Large-scale retrieval for medical image analytics: A comprehensive review. - Zhongyu Li 002; Xiaofan Zhang 002; Henning Müller; Shaoting Zhang 001 (Medical Image Anal., 2018)

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region. - Xiangde Luo; Wenjun Liao; Jianghong Xiao; Tao Song 002; Xiaofan Zhang 002; Kang Li 004; Guotai Wang; Shaoting Zhang 001 (CoRR, 2021)

One-shot Weakly-Supervised Segmentation in Medical Images. - Wenhui Lei; Qi Su; Ran Gu; Na Wang; Xinglong Liu; Guotai Wang; Xiaofan Zhang 002; Shaoting Zhang 001 (CoRR, 2021)

Large-scale gastric cancer screening and localization using multi-task deep neural network. - Hong Yu; Xiaofan Zhang 002; Lingjun Song; Liren Jiang; Xiaodi Huang; Wen Chen 022; Chenbin Zhang; Jiahui Li 005; Jiji Yang; Zhiqiang Hu; Qi Duan; Wanyuan Chen; et al. (Neurocomputing, 2021)

Efficient Federated Tumor Segmentation via Parameter Distance Weighted Aggregation and Client Pruning. - Meirui Jiang; Hongzheng Yang; Xiaofan Zhang 002; Shaoting Zhang 001; Qi Dou 001 (BrainLes@MICCAI (2), 2022)

Robust Cardiac MRI Segmentation with Data-Centric Models to Improve Performance via Intensive Pre-training and Augmentation. - Shizhan Gong; Weitao Lu; Jize Xie; Xiaofan Zhang 002; Shaoting Zhang 001; Qi Dou 001 (STACOM@MICCAI, 2022)

Contrastive Domain Disentanglement for Generalizable Medical Image Segmentation. - Ran Gu; Jiangshan Lu; Jingyang Zhang; Wenhui Lei; Xiaofan Zhang 002; Guotai Wang; Shaoting Zhang 001 (CoRR, 2022)

DigestPath: A benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system. - Qian Da; Xiaodi Huang; Zhongyu Li 002; Yanfei Zuo; Chenbin Zhang; Jingxin Liu; Wen Chen 001; Jiahui Li 005; Dou Xu; Zhiqiang Hu; Hongmei Yi; Yan Guo; et al. (Medical Image Anal., 2022)

Segmentation only uses sparse annotations: Unified weakly and semi-supervised learning in medical images. - Feng Gao; Minhao Hu; Min-Er Zhong; Shixiang Feng; Xuwei Tian; Xiaochun Meng; Ma-yi-di-li Ni-jia-ti; Zeping Huang; Minyi Lv; Tao Song 002; Xiaofan Zhang 002; Xiaoguang Zou; et al. (Medical Image Anal., 2022)

WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image. - Xiangde Luo; Wenjun Liao; Jianghong Xiao; Jieneng Chen; Tao Song 002; Xiaofan Zhang 002; Kang Li 004; Dimitris N. Metaxas; Guotai Wang; Shaoting Zhang 001 (Medical Image Anal., 2022)

MidMed: Towards Mixed-Type Dialogues for Medical Consultation. - Xiaoming Shi; Zeming Liu; Chuan Wang 002; Haitao Leng; Kui Xue; Xiaofan Zhang 002; Shaoting Zhang 001 (ACL (1), 2023)

Alleviating Exposure Bias via Multi-level Contrastive Learning and Deviation Simulation in Abstractive Summarization. - Jiawen Xie; Qi Su; Shaoting Zhang 001; Xiaofan Zhang 002 (ACL (Findings), 2023)

KiUT: Knowledge-injected U-Transformer for Radiology Report Generation. - Zhongzhen Huang; Xiaofan Zhang 002; Shaoting Zhang 001 (CVPR, 2023)

Automatic Lobe Segmentation Using Attentive Cross Entropy and End-to-End Fissure Generation. - Qi Su; Na Wang; Jiawen Xie; Yinan Chen; Xiaofan Zhang 002 (ISBI, 2023)

Efficient Subclass Segmentation in Medical Images. - Linrui Dai; Wenhui Lei; Xiaofan Zhang 002 (MICCAI (2), 2023)

MedLSAM: Localize and Segment Anything Model for 3D Medical Images. - Wenhui Lei; Xu Wei; Xiaofan Zhang 002; Kang Li 004; Shaoting Zhang 001 (CoRR, 2023)

AG-CRC: Anatomy-Guided Colorectal Cancer Segmentation in CT with Imperfect Anatomical Knowledge. - Rongzhao Zhang; Zhian Bai; Ruoying Yu; Wenrao Pang; Lingyun Wang; Lifeng Zhu; Xiaofan Zhang 002; Huan Zhang; Weiguo Hu (CoRR, 2023)

SHA-SCP: A UI Element Spatial Hierarchy Aware Smartphone User Click Behavior Prediction Method. - Ling Chen; Yiyi Peng; Kai Qian; Hongyu Shi; Xiaofan Zhang 002 (CoRR, 2023)

PathoDuet: Foundation Models for Pathological Slide Analysis of H&E and IHC Stains. - Shengyi Hua; Fang Yan 002; Tianle Shen 001; Xiaofan Zhang 002 (CoRR, 2023)

Contrastive Semi-Supervised Learning for Domain Adaptive Segmentation Across Similar Anatomical Structures. - Ran Gu; Jingyang Zhang; Guotai Wang; Wenhui Lei; Tao Song 002; Xiaofan Zhang 002; Kang Li 004; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2023)

Hippocampus segmentation after brain tumor resection via postoperative region synthesis. - Changjuan Tao; Difei Gu; Rui Huang 001; Ling Zhou; Zhiqiang Hu; Yuanyuan Chen; Xiaofan Zhang 002; Hongsheng Li 001 (BMC Medical Imaging, 2023)

Medical Dialogue System: A Survey of Categories, Methods, Evaluation and Challenges. - Xiaoming Shi; Zeming Liu; Li Du; Yuxuan Wang 001; Hongru Wang 003; Yuhang Guo 001; Tong Ruan; Jie Xu; Xiaofan Zhang 002; Shaoting Zhang 001 (ACL (Findings), 2024)

GECSum: Generative Evaluation-Driven Sequence Level Contrastive Learning for Abstractive Summarization. - Jiawen Xie; Shaoting Zhang 001; Xiaofan Zhang 002 (LREC/COLING, 2024)

ZePT: Zero-Shot Pan-Tumor Segmentation via Query-Disentangling and Self-Prompting. - Yankai Jiang 003; Zhongzhen Huang; Rongzhao Zhang; Xiaofan Zhang 002; Shaoting Zhang 001 (CVPR, 2024)

Modality-Aware and Shift Mixer for Multi-Modal Brain Tumor Segmentation. - Zhongzhen Huang; Linda Wei; Shaoting Zhang 001; Xiaofan Zhang 002 (ECAI, 2024)

PathoTune: Adapting Visual Foundation Model to Pathological Specialists. - Jiaxuan Lu; Fang Yan 002; Xiaofan Zhang 002; Yue Gao 002; Shaoting Zhang 001 (MICCAI (4), 2024)

DeReStainer: H&E to IHC Pathological Image Translation via Decoupled Staining Channels. - Linda Wei; Shengyi Hua; Shaoting Zhang 001; Xiaofan Zhang 002 (DGM4MICCAI@MICCAI, 2024)

Incorporating Clinical Guidelines Through Adapting Multi-modal Large Language Model for Prostate Cancer PI-RADS Scoring. - Tiantian Zhang; Manxi Lin; Hongda Guo; Xiaofan Zhang 002; Ka Fung Peter Chiu; Aasa Feragen; Qi Dou 001 (MICCAI (5), 2024)

CAT: Coordinating Anatomical-Textual Prompts for Multi-Organ and Tumor Segmentation. - Zhongzhen Huang; Yankai Jiang 003; Rongzhao Zhang; Shaoting Zhang 001; Xiaofan Zhang 002 (NeurIPS, 2024)

MedBench: A Comprehensive, Standardized, and Reliable Benchmarking System for Evaluating Chinese Medical Large Language Models. - Mianxin Liu; Weiguo Hu; Jinru Ding; Jie Xu; Xiaoyang Li; Lifeng Zhu; Zhian Bai; Xiaoming Shi; Benyou Wang; Haitao Song 001; Pengfei Liu 003; Xiaofan Zhang 002; et al. (Big Data Min. Anal., 2024)

OpenMEDLab: An Open-source Platform for Multi-modality Foundation Models in Medicine. - Xiaosong Wang 001; Xiaofan Zhang 002; Guotai Wang; Junjun He; Zhongyu Li 002; Wentao Zhu 001; Yi Guo 002; Qi Dou 001; Xiaoxiao Li; Dequan Wang; Liang Hong; Qicheng Lao; et al. (CoRR, 2024)

GuideGen: A Text-guided Framework for Joint CT Volume and Anatomical structure Generation. - Linrui Dai; Rongzhao Zhang; Zhongzhen Huang; Xiaofan Zhang 002 (CoRR, 2024)

VLM-CPL: Consensus Pseudo Labels from Vision-Language Models for Human Annotation-Free Pathological Image Classification. - Lanfeng Zhong; Xin Liao; Shaoting Zhang 001; Xiaofan Zhang 002; Guotai Wang (CoRR, 2024)

CT Synthesis with Conditional Diffusion Models for Abdominal Lymph Node Segmentation. - Yongrui Yu; Hanyu Chen; Zitian Zhang; Qiong Xiao; Wenhui Lei; Linrui Dai; Yu Fu; Hui Tan; Guan Wang; Peng Gao; Xiaofan Zhang 002 (CoRR, 2024)

Grounded Knowledge-Enhanced Medical VLP for Chest X-Ray. - Qiao Deng; Zhongzhen Huang; Yunqi Wang; Zhichuan Wang; Zhao Wang 006; Xiaofan Zhang 002; Qi Dou 001; Yeung Yu Hui; Edward S. Hui (CoRR, 2024)

Tool Calling: Enhancing Medication Consultation via Retrieval-Augmented Large Language Models. - Zhongzhen Huang; Kui Xue; Yongqi Fan; Linjie Mu; Ruoyu Liu; Tong Ruan; Shaoting Zhang 001; Xiaofan Zhang 002 (CoRR, 2024)

MedDiff-FM: A Diffusion-based Foundation Model for Versatile Medical Image Applications. - Yongrui Yu; Yannian Gu; Shaoting Zhang 001; Xiaofan Zhang 002 (CoRR, 2024)

PathoDuet: Foundation models for pathological slide analysis of H&E and IHC stains. - Shengyi Hua; Fang Yan 002; Tianle Shen 001; Lei Ma 006; Xiaofan Zhang 002 (Medical Image Anal., 2024)

USFM: A universal ultrasound foundation model generalized to tasks and organs towards label efficient image analysis. - Jing Jiao; Jin Zhou; Xiaokang Li; Menghua Xia; Yi Huang 018; Lihong Huang; Na Wang; Xiaofan Zhang 002; Shichong Zhou; Yuanyuan Wang 001; Yi Guo 002 (Medical Image Anal., 2024)

Deblurring masked image modeling for ultrasound image analysis. - Qingbo Kang; Qicheng Lao; Jun Gao; Jingyan Liu; Huahui Yi; Buyun Ma; Xiaofan Zhang 002; Kang Li 004 (Medical Image Anal., 2024)

One-Shot Weakly-Supervised Segmentation in 3D Medical Images. - Wenhui Lei; Qi Su; Tianyu Jiang; Ran Gu; Na Wang; Xinglong Liu; Guotai Wang; Xiaofan Zhang 002; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2024)

MMXU: A Multi-Modal and Multi-X-ray Understanding Dataset for Disease Progression. - Linjie Mu; Zhongzhen Huang; Shengqian Qin; Yakun Zhu; Shaoting Zhang 001; Xiaofan Zhang 002 (ACL (Findings), 2025)

Meta-Tool: Unleash Open-World Function Calling Capabilities of General-Purpose Large Language Models. - Shengqian Qin; Yakun Zhu; Linjie Mu; Shaoting Zhang 001; Xiaofan Zhang 002 (ACL (1), 2025)

An LLM-based Framework for Biomedical Terminology Normalization in Social Media via Multi-Agent Collaboration. - Yongqi Fan; Kui Xue; Zelin Li 004; Xiaofan Zhang 002; Tong Ruan (COLING, 2025)

Interactive Evaluation for Medical LLMs via Task-oriented Dialogue System. - Ruoyu Liu; Kui Xue; Xiaofan Zhang 002; Shaoting Zhang 001 (COLING, 2025)

Unleashing the Potential of Vision-Language Pre-Training for 3D Zero-Shot Lesion Segmentation via Mask-Attribute Alignment. - Yankai Jiang 003; Wenhui Lei; Xiaofan Zhang 002; Shaoting Zhang 001 (ICLR, 2025)

Concepts from Neurons: Building Interpretable Medical Image Diagnostic Models by Dissecting Opaque Neural Networks. - Shizhan Gong; Huayu Wang; Xiaofan Zhang 002; Qi Dou 001 (IPMI (2), 2025)

MedOdyssey: A Medical Domain Benchmark for Long Context Evaluation Up to 200K Tokens. - Yongqi Fan; Hongli Sun; Kui Xue; Xiaofan Zhang 002; Shaoting Zhang 001; Tong Ruan (NAACL (Findings), 2025)

MeNTi: Bridging Medical Calculator and LLM Agent with Nested Tool Calling. - Yakun Zhu; Shaohang Wei; Xu Wang; Kui Xue; Shaoting Zhang 001; Xiaofan Zhang 002 (NAACL (Long Papers), 2025)

Maxillofacial bone movements-aware dual graph convolution approach for postoperative facial appearance prediction. - Xinrui Huang; Dongming He; Zhenming Li; Xiaofan Zhang 002; Xudong Wang (Medical Image Anal., 2025)

MedLSAM: Localize and segment anything model for 3D CT images. - Wenhui Lei; Wei Xu 046; Kang Li 004; Xiaofan Zhang 002; Shaoting Zhang 001 (Medical Image Anal., 2025)

O1 Replication Journey - Part 3: Inference-time Scaling for Medical Reasoning. - Zhongzhen Huang; Gui Geng; Shengyi Hua; Zhen Huang; Haoyang Zou; Shaoting Zhang 001; Pengfei Liu 003; Xiaofan Zhang 002 (CoRR, 2025)

A Data-Efficient Pan-Tumor Foundation Model for Oncology CT Interpretation. - Wenhui Lei; Hanyu Chen; Zitian Zhang; Luyang Luo; Qiong Xiao; Yannian Gu; Peng Gao; Yankai Jiang 003; Ci Wang; Guangtao Wu; Tongjia Xu; Yingjie Zhang; et al. (CoRR, 2025)

Shazam: Unifying Multiple Foundation Models for Advanced Computational Pathology. - Wenhui Lei; Anqi Li; Yusheng Tan; Hanyu Chen; Xiaofan Zhang 002 (CoRR, 2025)

LesionDiffusion: Towards Text-controlled General Lesion Synthesis. - Henrui Tian; Wenhui Lei; Linrui Dai; Hanyu Chen; Xiaofan Zhang 002 (CoRR, 2025)

MFM-DA: Instance-Aware Adaptor and Hierarchical Alignment for Efficient Domain Adaptation in Medical Foundation Models. - Jia-Xuan Jiang 001; Wenhui Lei; Yifeng Wu; Hongtao Wu; Furong Li; Yining Xie; Xiaofan Zhang 002; Zhong Wang 006 (CoRR, 2025)

Interactive Segmentation and Report Generation for CT Images. - Yannian Gu; Wenhui Lei; Hanyu Chen; Xiaofan Zhang 002; Shaoting Zhang 001 (CoRR, 2025)

Surgical Action Planning with Large Language Models. - Mengya Xu; Zhongzhen Huang; Jie Zhang; Xiaofan Zhang 002; Qi Dou 001 (CoRR, 2025)

PathOrchestra: A Comprehensive Foundation Model for Computational Pathology with Over 100 Diverse Clinical-Grade Tasks. - Fang Yan 002; Jianfeng Wu; Jiawen Li 005; Wei Wang 057; Jiaxuan Lu; Wen Chen 001; Zizhao Gao; Jianan Li; Hong Yan; Jiabo Ma; Minda Chen; Yang Lu 009; et al. (CoRR, 2025)

DiagnosisArena: Benchmarking Diagnostic Reasoning for Large Language Models. - Yakun Zhu; Zhongzhen Huang; Linjie Mu; Yutong Huang; Wei Nie; Jiaji Liu; Shaoting Zhang 001; Pengfei Liu 003; Xiaofan Zhang 002 (CoRR, 2025)

Elicit and Enhance: Advancing Multimodal Reasoning in Medical Scenarios. - Linjie Mu; Zhongzhen Huang; Yakun Zhu; Xiangyu Zhao; Shaoting Zhang 001; Xiaofan Zhang 002 (CoRR, 2025)