PDTD: a web-accessible protein database for drug target identification. - Zhenting Gao; Honglin Li 003; Hailei Zhang; Xiaofeng Liu 005; Ling Kang; Xiaomin Luo; Weiliang Zhu; Kaixian Chen; Xicheng Wang; Hualiang Jiang (BMC Bioinform., 2008)

An Improved PMF Scoring Function for Universally Predicting the Interactions of a Ligand with Protein, DNA, and RNA. - Xiaoyu Zhao; Xiaofeng Liu 005; Yuanyuan Wang; Zhi Chen; Ling Kang; Hailei Zhang; Xiaomin Luo; Weiliang Zhu; Kaixian Chen; Honglin Li 003; Xicheng Wang; Hualiang Jiang (J. Chem. Inf. Model., 2008)

An effective docking strategy for virtual screening based on multi-objective optimization algorithm. - Honglin Li 003; Hailei Zhang; Mingyue Zheng; Jie Luo; Ling Kang; Xiaofeng Liu 005; Xicheng Wang; Hualiang Jiang (BMC Bioinform., 2009)

Cyndi: a multi-objective evolution algorithm based method for bioactive molecular conformational generation. - Xiaofeng Liu 005; Fang Bai; Sisheng Ouyang; Xicheng Wang; Honglin Li 003; Hualiang Jiang (BMC Bioinform., 2009)

Bioactive Conformational Generation of Small Molecules: A Comparative Analysis between Force-Field and Multiple Empirical Criteria Based Methods. - Fang Bai; Xiaofeng Liu 005; Jiabo Li; Haoyun Zhang; Hualiang Jiang; Xicheng Wang; Honglin Li 003 (BMC Bioinform., 2010)

PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach. - Xiaofeng Liu 005; Sisheng Ouyang; Biao Yu; Yabo Liu; Kai Huang; Jiayu Gong; Siyuan Zheng; Zhihua Li; Honglin Li 003; Hualiang Jiang (Nucleic Acids Res., 2010)

Identification of Inhibitors against p90 Ribosomal S6 Kinase 2 (RSK2) through Structure-Based Virtual Screening with the Inhibitor-Constrained Refined Homology Model. - Shiliang Li; Yi Zhou; Weiqiang Lu; Ye Zhong; Wenlong Song; Kangdong Liu; Jin Huang; Zhenjiang Zhao; Yufang Xu; Xiaofeng Liu 005; Honglin Li 003 (J. Chem. Inf. Model., 2011)

SHAFTS: A Hybrid Approach for 3D Molecular Similarity Calculation. 1. Method and Assessment of Virtual Screening. - Xiaofeng Liu 005; Hualiang Jiang; Honglin Li 003 (J. Chem. Inf. Model., 2011)

ChemMapper: a versatile web server for exploring pharmacology and chemical structure association based on molecular 3D similarity method. - Jiayu Gong; Chaoqian Cai; Xiaofeng Liu 005; Xin Ku; Hualiang Jiang; Daqi Gao; Honglin Li 003 (Bioinform., 2013)

PTID: an integrated web resource and computational tool for agrochemical discovery. - Jiayu Gong; Xiaofeng Liu 005; Xianwen Cao; Yanyan Diao; Daqi Gao; Honglin Li 003; Xuhong Qian (Bioinform., 2013)

SimG: An Alignment Based Method for Evaluating the Similarity of Small Molecules and Binding Sites. - Chaoqian Cai; Jiayu Gong; Xiaofeng Liu 005; Daqi Gao; Honglin Li 003 (J. Chem. Inf. Model., 2013)

iDrug: a web-accessible and interactive drug discovery and design platform. - Xia Wang; Haipeng Chen; Feng Yang; Jiayu Gong; Shiliang Li; Jianfeng Pei; Xiaofeng Liu 005; Hualiang Jiang; Luhua Lai; Honglin Li 003 (J. Cheminformatics, 2014)

Enhancing the Enrichment of Pharmacophore-Based Target Prediction for the Polypharmacological Profiles of Drugs. - Xia Wang; Chenxu Pan; Jiayu Gong; Xiaofeng Liu 005; Honglin Li 003 (J. Chem. Inf. Model., 2016)

PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database. - Xia Wang; Yihang Shen; Shiwei Wang; Shiliang Li; Weilin Zhang; Xiaofeng Liu 005; Luhua Lai; Jianfeng Pei; Honglin Li 003 (Nucleic Acids Res., 2017)