Haplotype Block Definition and Its Application. - Xiaofeng Zhu 003; Shuanglin Zhang; Donghai Kan; Richard S. Cooper (Pacific Symposium on Biocomputing, 2004)

Interrogating local population structure for fine mapping in genome-wide association studies. - Huaizhen Qin; Nathan Morris; Sun J. Kang; Mingyao Li; Bamidele Tayo; Helen Lyon; Joel Hirschhorn; Richard S. Cooper; Xiaofeng Zhu 003 (Bioinform., 2010)

Systems Biology Analyses of Gene Expression and Genome Wide Association Study Data in Obstructive Sleep Apnea. - Yu Liu 093; Sanjay R. Patel; Rod K. Nibbe; Sean Maxwell; Salim A. Chowdhury; Mehmet Koyutürk; Xiaofeng Zhu 003; Emma Larkin; Sarah Buxbaum; Naresh Punjabi; Sina Gharib; Susan Redline; et al. (Pacific Symposium on Biocomputing, 2011)

Adjustment for local ancestry in genetic association analysis of admixed populations. - Xuexia Wang; Xiaofeng Zhu 003; Huaizhen Qin; Richard S. Cooper; Warren J. Ewens; Chun Li; Mingyao Li (Bioinform., 2011)

Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data. - Yu Liu 093; Sean Maxwell; Tao Feng; Xiaofeng Zhu 003; Robert C. Elston; Mehmet Koyutürk; Mark R. Chance (BMC Syst. Biol., 2012)

Finding dense and connected subgraphs in dual networks. - Yubao Wu; Ruoming Jin; Xiaofeng Zhu 003; Xiang Zhang 001 (ICDE, 2015)

Mining Dual Networks: Models, Algorithms, and Applications. - Yubao Wu; Xiaofeng Zhu 003; Li Li; Wei Fan 001; Ruoming Jin; Xiang Zhang 001 (ACM Trans. Knowl. Discov. Data, 2016)

Finding susceptible and protective interaction patterns in large-scale genetic association study. - Yuan Li 008; Yuhai Zhao; Guoren Wang; Xiaofeng Zhu 003; Xiang Zhang 001; Zhanghui Wang; Jun Pang 001 (Frontiers Comput. Sci., 2017)

VarExp: estimating variance explained by genome-wide GxE summary statistics. - Vincent Laville; Amy R. Bentley; Florian Privé; Xiaofeng Zhu 003; Jim Gauderman; Thomas W. Winkler; Michael A. Province; D. C. Rao; Hugues Aschard (Bioinform., 2018)

An iterative approach to detect pleiotropy and perform Mendelian Randomization analysis using GWAS summary statistics. - Xiaofeng Zhu 003; Xiaoyin Li; Rong Xu; Tao Wang (Bioinform., 2021)

Mendelian randomization and pleiotropy analysis. - Xiaofeng Zhu 003 (Quant. Biol., 2021)

A multivariable cis-Mendelian randomization method robust to weak instrument bias and horizontal pleiotropy bias. - Yihe Yang; Noah Lorincz-Comi; Mengxuan Li 010; Xiaofeng Zhu 003 (Briefings Bioinform., 2025)