HotSpot3D web server: an integrated resource for mutation analysis in protein 3D structures. - Shanyu Chen; Xiaoyu He; Ruilin Li; Xiaohong Duan; Beifang Niu (Bioinform., 2020)

MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data. - Xinyin Han; Shuying Zhang; Daniel Cui Zhou; Dongliang Wang; Xiaoyu He; Danyang Yuan; Ruilin Li; Jiayin He; Xiaohong Duan; Michael C. Wendl; Li Ding; Beifang Niu (Briefings Bioinform., 2021)

Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes. - Xiaoyu He; Shanyu Chen; Ruilin Li; Xinyin Han; Zhipeng He 003; Danyang Yuan; Shuying Zhang; Xiaohong Duan; Beifang Niu (Briefings Bioinform., 2021)

Comprehensive review and evaluation of computational methods for identifying FLT3-internal tandem duplication in acute myeloid leukaemia. - Danyang Yuan; Xiaoyu He; Xinyin Han; Chunyan Yang; Fei Liu; Shuying Zhang; Haijing Luan; Ruilin Li; Jiayin He; Xiaohong Duan; Dongliang Wang; Qiming Zhou; et al. (Briefings Bioinform., 2021)

OncoPubMiner: a platform for mining oncology publications. - Quan Xu; Yueyue Liu; Jifang Hu; Xiaohong Duan; Niuben Song; Jiale Zhou; Jincheng Zhai; Junyan Su; Siyao Liu; Fan Chen; Wei Zheng; Zhongjia Guo; et al. (Briefings Bioinform., 2022)

Multi-class Cancer Classification of Whole Slide Images Through Transformer and Multiple Instance Learning. - Haijing Luan; Taiyuan Hu; Jifang Hu; Ruilin Li; Detao Ji; Jiayin He; Xiaohong Duan; Chunyan Yang; Yajun Gao; Fan Chen; Beifang Niu (ISBRA, 2023)

Transformer-Based Multi-Scale Fusion for Robust Predicting Microsatellite Instability from Pathological Images. - Taiyuan Hu; Haijing Luan; Rui Yan; Jifang Hu; Kaixing Yang; Xinyin Han; Weier Liu; Jiayin He; Xiaohong Duan; Ruilin Li; Fa Zhang; Beifang Niu (BIBM, 2024)