Identifying disease genes and module biomarkers by differential interactions. - Xiaoping Liu 002; Zhi-Ping Liu; Xing-Ming Zhao; Luonan Chen (J. Am. Medical Informatics Assoc., 2012)

eFG: an electronic resource for Fusarium graminearum. - Xiaoping Liu 002; Xiaodong Zhang; Weihua Tang; Luonan Chen; Xing-Ming Zhao (Database J. Biol. Databases Curation, 2013)

Identifying critical transitions of complex diseases based on a single sample. - Rui Liu 009; Xiangtian Yu; Xiaoping Liu 002; Dong Xu 002; Kazuyuki Aihara; Luonan Chen (Bioinform., 2014)

The Dynamics of DNA Methylation Covariation Patterns in Carcinogenesis. - Andrew E. Teschendorff; Xiaoping Liu 002; Helena Carén; Steve M. Pollard; Stephan Beck 002; Martin Widschwendter; Luonan Chen (PLoS Comput. Biol., 2014)

Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals. - Tao Zeng 003; Wanwei Zhang; Xiangtian Yu; Xiaoping Liu 002; Meiyi Li; Luonan Chen (Briefings Bioinform., 2016)

Detecting causality from short time-series data based on prediction of topologically equivalent attractors. - Ben-gong Zhang; Weibo Li; Yazhou Shi; Xiaoping Liu 002; Luonan Chen (BMC Syst. Biol., 2017)

Quantifying critical states of complex diseases using single-sample dynamic network biomarkers. - Xiaoping Liu 002; Xiao Chang; Rui Liu 009; Xiangtian Yu; Luonan Chen; Kazuyuki Aihara (PLoS Comput. Biol., 2017)

Feature selection of gene expression data for Cancer classification using double RBF-kernels. - Shenghui Liu; Chunrui Xu; Yusen Zhang 002; Jiaguo Liu; Bin Yu 007; Xiaoping Liu 002; Matthias Dehmer (BMC Bioinform., 2018)

Quantifying Direct Dependencies in Biological Networks by Multiscale Association Analysis. - Jifan Shi; Juan Zhao; Xiaoping Liu 002; Luonan Chen; Tiejun Li (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Disease characterization using a partial correlation-based sample-specific network. - Yanhong Huang; Xiao Chang; Yu Zhang; Luonan Chen; Xiaoping Liu 002 (Briefings Bioinform., 2021)

FEGS: a novel feature extraction model for protein sequences and its applications. - Zengchao Mu; Ting Yu 010; Xiaoping Liu 002; Hongyu Zheng; Leyi Wei; Juntao Liu (BMC Bioinform., 2021)

Transcriptome analysis method based on differential distribution evaluation. - Yiwei Meng; Yanhong Huang; Xiao Chang; Xiaoping Liu 002; Luonan Chen (Briefings Bioinform., 2022)

Identifying network biomarkers of cancer by sample-specific differential network. - Yu Zhang; Xiao Chang; Jie Xia; Yanhong Huang; Shaoyan Sun; Luonan Chen; Xiaoping Liu 002 (BMC Bioinform., 2022)

Detecting tipping points of complex diseases by network information entropy. - Chengshang Lyu; Lingxi Chen; Xiaoping Liu 002 (Briefings Bioinform., 2024)

MDIC3: Matrix decomposition to infer cell-cell communication. - Yi Liu 112; Yuelei Zhang; Xiao Chang; Xiaoping Liu 002 (Patterns, 2024)

Spatially contrastive variational autoencoder for deciphering tissue heterogeneity from spatially resolved transcriptomics. - Yaofeng Hu; Kai Xiao; Hengyu Yang; Xiaoping Liu 002; Chuanchao Zhang; Qianqian Shi (Briefings Bioinform., 2024)