DiMSim: A Discrete-Event Simulator of Metabolic Networks. - Xiaoqin Xia; Michael J. Wise (J. Chem. Inf. Comput. Sci., 2003)

WebArray: an online platform for microarray data analysis. - Xiaoqin Xia; Michael McClelland; Yipeng Wang 006 (BMC Bioinform., 2005)

WebArrayDB: cross-platform microarray data analysis and public data repository. - Xiaoqin Xia; Michael McClelland; Steffen Porwollik; Wenzhi Song; Xianling Cong; Yipeng Wang 006 (Bioinform., 2009)

TabSQL: a MySQL tool to facilitate mapping user data to public databases. - Xiaoqin Xia; Michael McClelland; Yipeng Wang 006 (BMC Bioinform., 2010)

Advances in Statistical Medicine. - Sujay Datta; Xiaoqin Xia; Samsiddhi Bhattacharjee; Zhenyu Jia (Comput. Math. Methods Medicine, 2014)

The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations. - Yaxin Chen; Mijuan Shi; Wanting Zhang; Yingyin Cheng; Yaping Wang; Xiaoqin Xia (Database J. Biol. Databases Curation, 2017)

Visual Omics: a web-based platform for omics data analysis and visualization with rich graph-tuning capabilities. - Heng Li; Mijuan Shi; Keyi Ren; Lei Zhang; Weidong Ye; Wanting Zhang; Yingyin Cheng; Xiaoqin Xia (Bioinform., 2023)