Association mapping and fine mapping with TreeLD. - Sebastian Zöllner; Xiaoquan Wen; Jonathan K. Pritchard (Bioinform., 2005)

Invited Keynote Talk: Set-Level Analyses for Genome-Wide Association Data. - Dan L. Nicolae; Omar De la Cruz; William Wen; Baoguan Ke; Minsun Song (ISBRA, 2008)

Association studies for untyped markers with TUNA. - Xiaoquan Wen; Dan L. Nicolae (Bioinform., 2008)

QuASAR: quantitative allele-specific analysis of reads. - Chris T. Harvey; Gregory A. Moyerbrailean; Gordon O. Davis; Xiaoquan Wen; Francesca Luca; Roger Pique-Regi (Bioinform., 2015)

QuASAR-MPRA: accurate allele-specific analysis for massively parallel reporter assays. - Cynthia A. Kalita; Gregory A. Moyerbrailean; Christopher Brown; Xiaoquan Wen; Francesca Luca; Roger Pique-Regi (Bioinform., 2018)

BAGSE: a Bayesian hierarchical model approach for gene set enrichment analysis. - Abhay Hukku; Corbin Quick; Francesca Luca; Roger Pique-Regi; Xiaoquan Wen (Bioinform., 2020)

PyTorch 2: Faster Machine Learning Through Dynamic Python Bytecode Transformation and Graph Compilation. - Jason Ansel; Edward Z. Yang; Horace He; Natalia Gimelshein; Animesh Jain; Michael Voznesensky; Bin Bao; Peter Bell 008; David Berard; Evgeni Burovski; Geeta Chauhan; Anjali Chourdia; et al. (ASPLOS (2), 2024)

Interpretable Clustering with the Distinguishability Criterion. - Ali Turfah; Xiaoquan Wen (CoRR, 2024)