scHiCPTR: unsupervised pseudotime inference through dual graph refinement for single-cell Hi-C data. - Hongqiang Lyu; Erhu Liu; Zhifang Wu; Yao Li; Yuan Liu; Xiaoran Yin (Bioinform., 2022)

DeepExDC interprets genomic compartmentalization changes in single-cell Hi-C data. - Hongqiang Lyu; Pei Cao; Wenyao Long; Xiaoran Yin; Shengjun Xu; Laiyi Fu (Briefings Bioinform., 2025)

Unlocking Smarter Device Control: Foresighted Planning with a World Model-Driven Code Execution Approach. - Xiaoran Yin; Xu Luo 003; Hao Wu 070; Lianli Gao; Jingkuan Song (CoRR, 2025)