MARD: a new method to detect differential gene expression in treatment-control time courses. - Chao Cheng; Xiaotu Ma; Xiting Yan; Fengzhu Sun; Lei M. Li (Bioinform., 2006)

CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data. - Xiaotu Ma; Hyunju Lee; Li Wang; Fengzhu Sun (Bioinform., 2007)

The effects of protein interactions, gene essentiality and regulatory regions on expression variation. - Linqi Zhou; Xiaotu Ma; Fengzhu Sun (BMC Syst. Biol., 2008)

A Fast Binary Image Segmentation Algorithm and its Application to in Situ Hybridization Data. - Guanliang Liu; Zhigang Luo; Bo Yuan; Xiaotu Ma (BMEI, 2009)

Understanding protein evolutionary rate by integrating gene co-expression with protein interactions. - Kaifang Pang; Chao Cheng; Zhenyu Xuan; Huanye Sheng; Xiaotu Ma (BMC Syst. Biol., 2010)

Integrative approaches for predicting protein function and prioritizing genes for complex phenotypes using protein interaction networks. - Xiaotu Ma; Ting Chen 006; Fengzhu Sun (Briefings Bioinform., 2014)

Pan-cancer genome and transcriptome analyses of 1, 699 paediatric leukaemias and solid tumours. - Xiaotu Ma; Yu Liu; Yanling Liu; Ludmil B. Alexandrov; Michael N. Edmonson; Charles Gawad; Xin Zhou; Yongjin Li; Michael Rusch; John Easton; Robert Huether; Veronica Gonzalez-Pena; et al. (Nat., 2018)

Applications of probability and statistics in cancer genomics. - Xiaotu Ma; Sasi Arunachalam; Yanling Liu (Quant. Biol., 2020)