RAREMETAL: fast and powerful meta-analysis for rare variants. - Shuang Feng; Dajiang Liu; Xiaowei Zhan; Mary Kate Wing; Gonçalo R. Abecasis (Bioinform., 2014)

A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. - Rui Chen 021; Qiang Wei; Xiaowei Zhan; Xue Zhong; James S. Sutcliffe; Nancy J. Cox; Edwin H. Cook Jr.; Chun Li; Wei Chen 074; Bingshan Li (Bioinform., 2015)

A Bayesian framework for de novo mutation calling in parents-offspring trios. - Qiang Wei; Xiaowei Zhan; Xue Zhong; Yongzhuang Liu; Yujun Han; Wei Chen 074; Bingshan Li (Bioinform., 2015)

RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence data. - Xiaowei Zhan; Youna Hu; Bingshan Li; Gonçalo R. Abecasis; Dajiang J. Liu (Bioinform., 2016)

FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies. - Jiwoong Kim; Min Soo Kim 006; Andrew Y. Koh; Yang Xie; Xiaowei Zhan (BMC Bioinform., 2016)

DEFOR: depth- and frequency-based somatic copy number alteration detector. - He Zhang; Xiaowei Zhan; James Brugarolas; Yang Xie (Bioinform., 2019)

Seqminer2: an efficient tool to query and retrieve genotypes for statistical genetics analyses from biobank scale sequence dataset. - Lina Yang; Shuang Jiang; Bibo Jiang; Dajiang J. Liu; Xiaowei Zhan (Bioinform., 2020)

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning. - Jiwoong Kim; David E. Greenberg; Reed Pifer; Shuang Jiang; Guanghua Xiao; Samuel A. Shelburne; Andrew Y. Koh; Yang Xie; Xiaowei Zhan (PLoS Comput. Biol., 2020)

Spatial molecular profiling: platforms, applications and analysis tools. - Minzhe Zhang; Thomas Sheffield; Xiaowei Zhan; Qiwei Li 001; Donghan M. Yang; Yunguan Wang; Shidan Wang; Yang Xie; Tao Wang; Guanghua Xiao (Briefings Bioinform., 2021)

A Survey of Statistical Methods for Microbiome Data Analysis. - Kevin C. Lutz; Shuang Jiang; Michael L. Neugent; Nicole J. De Nisco; Xiaowei Zhan; Qiwei Li 001 (Frontiers Appl. Math. Stat., 2022)

Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach. - Shidan Wang; Ruichen Rong; Zifan Gu; Junya Fujimoto; Xiaowei Zhan; Yang Xie; Guanghua Xiao (Comput. Methods Programs Biomed., 2023)

Large language models enabled multiagent ensemble method for efficient EHR data labeling. - Jingwei Huang 002; Kuroush Nezafati; Ismael Villanueva-Miranda; Zifan Gu; Ann Marie Navar; Tingyi Wanyan; Qin Zhou; Bo Yao; Ruichen Rong; Xiaowei Zhan; Guanghua Xiao; Eric D. Peterson; et al. (CoRR, 2024)

Navigating electronic health record accuracy by examination of sex incongruent conditions. - Ling Cai; Ralph J. Deberardinis; Xiaowei Zhan; Guanghua Xiao; Yang Xie (J. Am. Medical Informatics Assoc., 2024)

A critical assessment of using ChatGPT for extracting structured data from clinical notes. - Jingwei Huang 002; Donghan M. Yang; Ruichen Rong; Kuroush Nezafati; Colin Treager; Zhikai Chi; Shidan Wang; Xian Cheng; Yujia Guo; Laura J. Klesse; Guanghua Xiao; Eric D. Peterson; et al. (npj Digit. Medicine, 2024)