Gene discovery using the maize genome database ZmDB. - Xiaowu Gai; Shailesh Lal; Liqun Xing; Volker Brendel; Virginia Walbot (Nucleic Acids Res., 2000)

CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics. - Xiaowu Gai; Juan C. Perin; Kevin Murphy 005; Ryan O'Hara; Monica D'arcy; Adam Wenocur; Hongbo M. Xie; Eric F. Rappaport; Tamim H. Shaikh; Peter S. White (BMC Bioinform., 2010)

Mitochondrial Genome Sequence Analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy. - Hongbo M. Xie; Juan C. Perin; Theodore G. Schurr; Matthew C. Dulik; Sergey I. Zhadanov; Joseph A. Baur; Michael P. King; Emily Place; Colleen Clarke; Michael Grauer; Jonathan Schug; Avni Santani; et al. (BMC Bioinform., 2011)

Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier. - Daniel Navarro-Gomez; Jeremy Leipzig; Lishuang Shen; Marie T. Lott; Alphons P. M. Stassen; Douglas C. Wallace; Janey L. Wiggs; Marni J. Falk; Mannis van Oven; Xiaowu Gai (Bioinform., 2015)

AnthOligo: automating the design of oligonucleotides for capture/enrichment technologies. - Pushkala Jayaraman; Timothy Mosbruger; Taishan Hu; Nikolaos G. Tairis; Chao Wu; Peter M. Clark; Monica D'arcy; Deborah Ferriola; Katarzyna Mackiewicz; Xiaowu Gai; Dimitrios Monos; Mahdi Sarmady (Bioinform., 2020)