An efficient motif finding algorithm for large DNA data sets. - Qiang Yu 003; Hongwei Huo; Xiaoyang Chen 004; Haitao Guo; Jeffrey Scott Vitter; Jun Huan (BIBM, 2014)

MSQ-Index: A Succinct Index for Fast Graph Similarity Search. - Xiaoyang Chen 004; Hongwei Huo; Jun Huan; Jeffrey Scott Vitter (CoRR, 2016)

Efficient Graph Similarity Search in External Memory. - Xiaoyang Chen 004; Hongwei Huo; Jun Huan; Jeffrey Scott Vitter (IEEE Access, 2017)

Fast Computation of Graph Edit Distance. - Xiaoyang Chen 004; Hongwei Huo; Jun Huan; Jeffrey Scott Vitter (CoRR, 2017)

Practical Succinct Text Indexes in External Memory. - Hongwei Huo; Xiaoyang Chen 004; Yuhao Zhao; Xiaojin Zhu 004; Jeffrey Scott Vitter (DCC, 2018)

An efficient algorithm for graph edit distance computation. - Xiaoyang Chen 004; Hongwei Huo; Jun Huan; Jeffrey Scott Vitter (Knowl. Based Syst., 2019)

Efficient Compression and Indexing for Highly Repetitive DNA Sequence Collections. - Hongwei Huo; Xiaoyang Chen 004; Xu Guo; Jeffrey Scott Vitter (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

MSQ-Index: A Succinct Index for Fast Graph Similarity Search. - Xiaoyang Chen 004; Hongwei Huo; Jun Huan; Jeffrey Scott Vitter; Weiguo Zheng; Lei Zou 001 (IEEE Trans. Knowl. Data Eng., 2021)

An Efficient Heuristic for Graph Edit Distance. - Xiaoyang Chen 004; Yujia Wang; Hongwei Huo; Jeffrey Scott Vitter (From Strings to Graphs, and Back Again, 2025)