Protein model quality assessment by learning-to-rank. - Xiaoyang Jing; Qiwen Dong; Xuan Liu; Bin Liu (BIBM, 2015)

Improved protein residue-residue contacts prediction using learning-to-rank. - Xiaoyang Jing; Qiwen Dong (BIBM, 2016)

MQAPRank: improved global protein model quality assessment by learning-to-rank. - Xiaoyang Jing; Qiwen Dong (BMC Bioinform., 2017)

RRCRank: a fusion method using rank strategy for residue-residue contact prediction. - Xiaoyang Jing; Qiwen Dong; Ruqian Lu (BMC Bioinform., 2017)

Biological Language Model - Theory and Application - Qiwen Dong; Xiaoyang Jing; Aoying Zhou; Xiuzhen Hu (Biological Language Model, 2020)

Amino Acid Encoding Methods for Protein Sequences: A Comprehensive Review and Assessment. - Xiaoyang Jing; Qiwen Dong; Daocheng Hong; Ruqian Lu (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

A Web-Based Protocol for Interprotein Contact Prediction by Deep Learning. - Xiaoyang Jing; Hong Zeng; Sheng Wang 001; Jinbo Xu (Protein-Protein Interaction Networks, 2020)

Improved protein model quality assessment by integrating sequential and pairwise features using deep learning. - Xiaoyang Jing; Jinbo Xu (Bioinform., 2021)

Fast and effective protein model refinement using deep graph neural networks. - Xiaoyang Jing; Jinbo Xu (Nat. Comput. Sci., 2021)

Improving protein structure prediction using templates and sequence embedding. - Fandi Wu; Xiaoyang Jing; Xiao Luo; Jinbo Xu (Bioinform., 2023)

HybAVPnet: A Novel Hybrid Network Architecture for Antiviral Peptides Prediction. - Ruiquan Ge; Yixiao Xia; Minchao Jiang; Gangyong Jia; Xiaoyang Jing; Ye Li 002; Yunpeng Cai (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)