mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer. - Shaoliang Peng; Xiaoyu Zhang 008; Yutong Lu; Xiangke Liao; Kai Lu 001; Canqun Yang; Jie Liu 002; Weiliang Zhu; Dongqing Wei (BIBM, 2016)

A novel algorithm for detecting co-evolutionary domains in protein and nucleotide sequences. - Xiaoyu Zhang 008; Xiangke Liao; Hao Zhu; Kenli Li 001; Benyun Shi; Shaoliang Peng (BIBM, 2017)

mD3DOCKxb: An Ultra-Scalable CPU-MIC Coordinated Virtual Screening Framework. - Shaoliang Peng; Xiaoyu Zhang 008; Shunyun Yang; Wenhe Su; Zhiqiang Zhang; Dong Dong; Kai Lu 001; Yutong Lu; Xiangke Liao; Bertil Schmidt; Weiliang Zhu; Kuan-Ching Li (CCGrid, 2017)

Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture. - Shaoliang Peng; Minxia Cheng; Kaiwen Huang; Yingbo Cui 001; Zhiqiang Zhang; Runxin Guo; Xiaoyu Zhang 008; Shunyun Yang; Xiangke Liao; Yutong Lu; Quan Zou 001; Benyun Shi (BMC Bioinform., 2018)

Unsupervised Annotation of Phenotypic Abnormalities via Semantic Latent Representations on Electronic Health Records. - Jingqing Zhang; Xiaoyu Zhang 008; Kai Sun 005; Xian Yang 001; Chengliang Dai; Yike Guo (BIBM, 2019)

Integrated Multi-omics Analysis Using Variational Autoencoders: Application to Pan-cancer Classification. - Xiaoyu Zhang 008; Jingqing Zhang; Kai Sun 005; Xian Yang 001; Chengliang Dai; Yike Guo (BIBM, 2019)

A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer. - Shaoliang Peng; Yingbo Cui 001; Shunyun Yang; Wenhe Su; Xiaoyu Zhang 008; Tenglilang Zhang; Weiguo Liu; Xingming Zhao (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer. - Shaoliang Peng; Xiaoyu Zhang 008; Wenhe Su; Dong Dong; Yutong Lu; Xiangke Liao; Kai Lu 001; Canqun Yang; Jie Liu 002; Weiliang Zhu; Dongqing Wei (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

XOmiVAE: an interpretable deep learning model for cancer classification using high-dimensional omics data. - Eloise Withnell; Xiaoyu Zhang 008; Kai Sun 005; Yike Guo (Briefings Bioinform., 2021)

OmiEmbed: reconstruct comprehensive phenotypic information from multi-omics data using multi-task deep learning. - Xiaoyu Zhang 008; Kai Sun 005; Yike Guo (CoRR, 2021)

A continuous glucose monitoring measurements forecasting approach via sporadic blood glucose monitoring. - Yuting Xing; Hangting Ye; Xiaoyu Zhang 008; Wei Cao 007; Shun Zheng 001; Jiang Bian 002; Yike Guo (BIBM, 2022)

OmiTrans: Generative Adversarial Networks Based Omics-to-omics Translation Framework. - Xiaoyu Zhang 008; Yike Guo (BIBM, 2022)

Attention-Driven Object Encoding and Multiscale Contextual Perception for Improved Cross-View Object Geo-Localization. - Haoshuai Song; Xiaochong Tong; Xiaoyu Zhang 008; Yaxian Lei; He Li; Congzhou Guo (IEEE Geosci. Remote. Sens. Lett., 2025)