Evidence for exon shuffling is sensitive to model choice. - Xiaoyue Cui; Maureen Stolzer; Dannie Durand (J. Bioinform. Comput. Biol., 2021)

Assessing the contribution of tumor mutational phenotypes to cancer progression risk. - Yifeng Tao; Ashok Rajaraman; Xiaoyue Cui; Ziyi Cui; Haoran Chen; Yuanqi Zhao; Jesse Eaton; Hannah Kim 003; Jian Ma 004; Russell Schwartz (PLoS Comput. Biol., 2021)

Simulating domain architecture evolution. - Xiaoyue Cui; Yifan Xue; Collin McCormack; Alejandro Garcés; Thomas W. Rachman; Yang Yi; Maureen Stolzer; Dannie Durand (Bioinform., 2022)