CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark. - Ningyu Zhang 001; Zhen Bi; Xiaozhuan Liang; Lei Li 040; Xiang Chen 016; Shumin Deng; Luoqiu Li; Hongbin Ye; Xin Shang; Kangping Yin; Chuanqi Tan; Jian Xu; et al. (CoRR, 2021)

CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark. - Ningyu Zhang 001; Mosha Chen; Zhen Bi; Xiaozhuan Liang; Lei Li 040; Xin Shang; Kangping Yin; Chuanqi Tan; Jian Xu; Fei Huang 002; Luo Si; Yuan Ni; et al. (ACL (1), 2022)

Contrastive Demonstration Tuning for Pre-trained Language Models. - Xiaozhuan Liang; Ningyu Zhang 001; Siyuan Cheng 008; Zhenru Zhang; Chuanqi Tan; Huajun Chen (EMNLP (Findings), 2022)

OntoProtein: Protein Pretraining With Gene Ontology Embedding. - Ningyu Zhang 001; Zhen Bi; Xiaozhuan Liang; Siyuan Cheng 008; Haosen Hong; Shumin Deng; Qiang Zhang 026; Jiazhang Lian; Huajun Chen (ICLR, 2022)

Decoupling Knowledge from Memorization: Retrieval-augmented Prompt Learning. - Xiang Chen 016; Lei Li 040; Ningyu Zhang 001; Xiaozhuan Liang; Shumin Deng; Chuanqi Tan; Fei Huang 002; Luo Si; Huajun Chen (NeurIPS, 2022)

DeepKE: A Deep Learning Based Knowledge Extraction Toolkit for Knowledge Base Population. - Ningyu Zhang 001; Xin Xu 010; Liankuan Tao; Haiyang Yu 003; Hongbin Ye; Xin Xie 006; Xiang Chen 016; Zhoubo Li; Lei Li 040; Xiaozhuan Liang; Yunzhi Yao; Shumin Deng; et al. (CoRR, 2022)

Contrastive Demonstration Tuning for Pre-trained Language Models. - Xiaozhuan Liang; Ningyu Zhang 001; Siyuan Cheng 008; Zhen Bi; Zhenru Zhang; Chuanqi Tan; Songfang Huang; Fei Huang 002; Huajun Chen (CoRR, 2022)

Relphormer: Relational Graph Transformer for Knowledge Graph Representation. - Zhen Bi; Siyuan Cheng 008; Ningyu Zhang 001; Xiaozhuan Liang; Feiyu Xiong; Huajun Chen (CoRR, 2022)

Multi-modal Protein Knowledge Graph Construction and Applications. - Siyuan Cheng 008; Xiaozhuan Liang; Zhen Bi; Huajun Chen; Ningyu Zhang 001 (CoRR, 2022)

Multi-Modal Protein Knowledge Graph Construction and Applications (Student Abstract). - Siyuan Cheng 008; Xiaozhuan Liang; Zhen Bi; Huajun Chen; Ningyu Zhang 001 (AAAI, 2023)

Multimodal Analogical Reasoning over Knowledge Graphs. - Ningyu Zhang 001; Lei Li 040; Xiang Chen 016; Xiaozhuan Liang; Shumin Deng; Huajun Chen (ICLR, 2023)

BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning. - Qizhi Pei; Lijun Wu 003; Kaiyuan Gao; Xiaozhuan Liang; Yin Fang; Jinhua Zhu 001; Shufang Xie 003; Tao Qin 001; Rui Yan 001 (ACL (Findings), 2024)

To Forget or Not? Towards Practical Knowledge Unlearning for Large Language Models. - Bozhong Tian; Xiaozhuan Liang; Siyuan Cheng 008; Qingbin Liu; Mengru Wang; Dianbo Sui; Xi Chen 003; Huajun Chen; Ningyu Zhang 001 (EMNLP (Findings), 2024)

Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models. - Yin Fang; Xiaozhuan Liang; Ningyu Zhang 001; Kangwei Liu; Rui Huang; Zhuo Chen 007; Xiaohui Fan; Huajun Chen (ICLR, 2024)

InstructEdit: Instruction-Based Knowledge Editing for Large Language Models. - Ningyu Zhang 001; Bozhong Tian; Siyuan Cheng 008; Xiaozhuan Liang; Yi Hu; Kouying Xue; Yanjie Gou; Xi Chen 003; Huajun Chen (IJCAI, 2024)

SFM-Protein: Integrative Co-evolutionary Pre-training for Advanced Protein Sequence Representation. - Liang He 010; Peiran Jin; Yaosen Min; Shufang Xie 003; Lijun Wu 003; Tao Qin 001; Xiaozhuan Liang; Kaiyuan Gao; Yuliang Jiang; Tie-Yan Liu (CoRR, 2024)

Relphormer: Relational Graph Transformer for Knowledge Graph Representations. - Zhen Bi; Siyuan Cheng 008; Jing Chen; Xiaozhuan Liang; Feiyu Xiong; Ningyu Zhang 001 (Neurocomputing, 2024)

ChineseHarm-Bench: A Chinese Harmful Content Detection Benchmark. - Kangwei Liu; Siyuan Cheng 008; Bozhong Tian; Xiaozhuan Liang; Yuyang Yin; Meng Han; Ningyu Zhang 001; Bryan Hooi; Xi Chen 003; Shumin Deng (CoRR, 2025)