Encoding protein structure with functions on graphs. - Promita Bose; Xiaxia Yu; Robert W. Harrison (BIBM Workshops, 2011)

Using triangulation to include target structure improves drug resistance prediction accuracy. - Robert W. Harrison; Xiaxia Yu; Irene T. Weber (ICCABS, 2013)

HIV drug resistance prediction using multiple regression. - Xiaxia Yu; Robert W. Harrison; Irene T. Weber (ICCABS, 2013)

Sparse Representation for HIV-1 Protease Drug Resistance Prediction. - Robert W. Harrison; Irene T. Weber; Xiaxia Yu (SDM, 2013)

FDT 2.0: Improving scalability of the fuzzy decision tree induction tool - integrating database storage. - Erin-Elizabeth A. Durham; Xiaxia Yu; Robert W. Harrison (CICARE, 2014)

Identifying representative drug resistant mutants of HIV reverse transcriptase. - Xiaxia Yu; Robert W. Harrison; Irene T. Weber (ICCABS, 2014)

Identifying representative drug resistant mutants of HIV. - Xiaxia Yu; Irene T. Weber; Robert W. Harrison (BMC Bioinform., 2015)

Automated prediction of HIV drug resistance from genotype data. - ChenHsiang Shen; Xiaxia Yu; Robert W. Harrison; Irene T. Weber (BMC Bioinform., 2016)

Large-scale Analysis of Opioid Poisoning Related Hospital Visits in New York State. - Xin Chen 022; Yu Wang 137; Xiaxia Yu; Elinor Schoenfeld; Mary M. Saltz; Joel H. Saltz; Fusheng Wang 001 (AMIA, 2017)

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. - Naiyun Zhou; Xiaxia Yu; Tianhao Zhao; Si Wen; Fusheng Wang 001; Wei Zhu 008; Tahsin M. Kurç; Allen R. Tannenbaum; Joel H. Saltz; Yi Gao 002 (Digital Pathology, 2017)

Is hippocampus getting bumpier with age: a quantitative analysis of fine-scale dentational feature under the hippocampus on 552 healthy subjects. - Shuxiu Cai; Xiaxia Yu; Qiaochu Zhang; Chuan Huang 002; Yi Gao 002 (Image Processing, 2019)

MCMC Guided CNN Training and Segmentation for Pancreas Extraction. - Jinchan He; Xiaxia Yu; Chudong Cai; Yi Gao 002 (CoRR, 2020)

Cross-Dataset Multiple Organ Segmentation From CT Imagery Using FBP-Derived Domain Adaptation. - Jun Huang; Xue Li; Jing Wang; Xiaxia Yu; Liangjia Zhu; Ying Zhan; Yi Gao 002; Chuan Huang 002 (IEEE Access, 2021)

MCMC Guided CNN Training and Segmentation for Pancreas Extraction. - Mu Tian; Jinchan He; Xiaxia Yu; Chudong Cai; Yi Gao 002 (IEEE Access, 2021)

An Open Source Platform for Computational Histopathology. - Xiaxia Yu; Bingshuai Zhao; Haofan Huang; Mu Tian; Sai Zhang; Hongping Song; Zengshan Li; Kun Huang; Yi Gao 002 (IEEE Access, 2021)

Generalizable deep clustering based on Bi-LSTM with applications to sepsis and acute kidney disease populations. - Yongsen Tan; Jiahui Huang; Jinhu Zhuang; Yong Liu; Haofan Huang; Xiaxia Yu; Fusheng Wang 001 (BIBM, 2022)

Open-source algorithm and software for computed tomography-based virtual pancreatoscopy and other applications. - Haofan Huang; Xiaxia Yu; Mu Tian; Weizhen He; Shawn Xiang Li; Zhengrong Liang; Yi Gao 002 (Vis. Comput. Ind. Biomed. Art, 2022)

A VR-based volumetric medical image segmentation and visualization system with natural human interaction. - Yi Gao 002; Cheng Chang; Xiaxia Yu; Pengjin Pang; Nian Xiong; Chuan Huang 002 (Virtual Real., 2022)

Identifying acute kidney injury subphenotypes using an outcome-driven deep-learning approach. - Yongsen Tan; Jiahui Huang; Jinhu Zhuang; Haofan Huang; Song Jiang; Miaowen She; Mu Tian; Yong Liu; Xiaxia Yu (J. Biomed. Informatics, 2023)

Expectation-maximization algorithm leads to domain adaptation for a perineural invasion and nerve extraction task in whole slide digital pathology images. - Xue Li; Jun Huang; Cuiting Wang; Xiaxia Yu; Tianhao Zhao; Chuan Huang 002; Yi Gao 002 (Medical Biol. Eng. Comput., 2023)

A generalizable and interpretable model for mortality risk stratification of sepsis patients in intensive care unit. - Jinhu Zhuang; Haofan Huang; Song Jiang; Jianwen Liang; Yong Liu; Xiaxia Yu (BMC Medical Informatics Decis. Mak., 2023)

BiDNAMamba: Pre-trained Bidirectional State Space Model for Motif Analysis in DNA. - Guangjian Zeng; Xiaxia Yu; Siyuan Tao; Weiye Zhou; Momiao Xiong; Shenying Fang (BIBM, 2024)

Continuous Identification of Sepsis-Associated Acute Heart Failure Patients: An Integrated LSTM-Based Algorithm. - Jinhu Zhuang; Linyan Xie; Chenxi Peng; Guangjian Zeng; Ming Wu; Xiaxia Yu (ISBRA (1), 2024)

Fine-grained subphenotypes in acute kidney injury populations based on deep clustering: Derivation and interpretation. - Yongsen Tan; Jiahui Huang; Jinhu Zhuang; Haofan Huang; Mu Tian; Yong Liu; Ming Wu; Xiaxia Yu (Int. J. Medical Informatics, 2024)

Enhanced Deformation Vector Field Generation With Diffusion Models and Mamba-Based Network for Registration Performance Enhancement. - Zengan Huang; Shan Gao; Xiaxia Yu; Liangjia Zhu; Yi Gao 002 (Int. J. Imaging Syst. Technol., 2024)