emiRIT: a text-mining-based resource for microRNA information. - Debarati Roychowdhury; Samir Gupta; Xihan Qin; Cecilia N. Arighi; K. Vijay-Shanker (Database J. Biol. Databases Curation, 2021)

Improving Disease Comorbidity Prediction with Biologically Supervised Graph Embedding. - Xihan Qin; Li Liao (ICCABS, 2023)

Discovering Communication Pattern Shifts in Large-Scale Networks using Encoder Embedding and Vertex Dynamics. - Cencheng Shen; Jonathan Larson; Ha Trinh; Xihan Qin; Youngser Park; Carey E. Priebe (CoRR, 2023)

Efficient Graph Encoder Embedding for Large Sparse Graphs in Python. - Xihan Qin; Cencheng Shen (SAI (3), 2024)

Improving Disease Comorbidity Prediction Based on Human Interactome with Biologically Supervised Graph Embedding. - Xihan Qin; Li Liao (CoRR, 2024)

Discovering Communication Pattern Shifts in Large-Scale Labeled Networks Using Encoder Embedding and Vertex Dynamics. - Cencheng Shen; Jonathan Larson; Ha Trinh; Xihan Qin; Youngser Park; Carey E. Priebe (IEEE Trans. Netw. Sci. Eng., 2024)

Graph Transformer with Disease Subgraph Positional Encoding for Improved Comorbidity Prediction. - Xihan Qin; Li Liao (CoRR, 2025)