MIRIA: a webserver for statistical, visual and meta-analysis of RNA editing data in mammals. - Xikang Feng; Zishuai Wang; Hechen Li; Shuai Cheng Li 001 (BMC Bioinform., 2019)

I-Impute: a self-consistent method to impute single cell RNA sequencing data. - Xikang Feng; Lingxi Chen; Zishuai Wang; Shuai Cheng Li 001 (BMC Genom., 2020)

Deep learning model reveals potential risk genes for ADHD, especially Ephrin receptor gene EPHA5. - Lu Liu; Xikang Feng; Haimei Li; Shuai Cheng Li 001; Qiujin Qian; Yufeng Wang (Briefings Bioinform., 2021)

Somatic variant analysis suite: copy number variation clonal visualization online platform for large-scale single-cell genomics. - Lingxi Chen; Yuhao Qing; Ruikang Li; Chaohui Li; Hechen Li; Xikang Feng; Shuai Cheng Li 001 (Briefings Bioinform., 2022)

Resolving single-cell copy number profiling for large datasets. - Ruohan Wang; Yuwei Zhang 005; Mengbo Wang 001; Xikang Feng; Jianping Wang 001; Shuai Cheng Li 001 (Briefings Bioinform., 2022)

DeepTAPE: Enhancing Systemic Lupus Erythematosus Diagnosis with Deep Learning Based on TCRβ CDR3 Sequences. - Tongfei Shen; Miaozhe Huo; Wan Nie; Kaiqi Li; Ziwei Ma; Xikang Feng; Shuai Cheng Li (BIBM, 2024)

TSEML: A task-specific embedding-based method for few-shot classification of cancer molecular subtypes. - Ran Su; Rui Shi; Hui Cui 002; Ping Xuan; Chengyan Fang; Xikang Feng; Qiangguo Jin (BIBM, 2024)

MSKI-Net: Towards modality-specific knowledge interaction for glioma survival prediction. - Ran Su; Jin Xiao; Hui Cui 002; Ping Xuan; Xikang Feng; Leyi Wei; Qiangguo Jin (BIBM, 2024)

A comprehensive benchmarking for evaluating TCR embeddings in modeling TCR-epitope interactions. - Xikang Feng; Miaozhe Huo; He Li; Yongze Yang; Yuepeng Jiang; Liang He; Shuai Cheng Li (Briefings Bioinform., 2024)

PKDF-Net: Anticancer peptide prediction via a prior-knowledge-aware dual-path feature-entangled network. - Qiangguo Jin; Ankang Wu; Leyi Wei; Hui Cui 002; Ping Xuan; Xikang Feng; Ran Su (Eng. Appl. Artif. Intell., 2025)