TruePIE: Discovering Reliable Patterns in Pattern-Based Information Extraction. - Qi Li 012; Meng Jiang 001; Xikun Zhang 001; Meng Qu; Timothy P. Hanratty; Jing Gao 004; Jiawei Han 001 (KDD, 2018)

Similarity Modeling on Heterogeneous Networks via Automatic Path Discovery. - Carl Yang 001; Mengxiong Liu; Frank He; Xikun Zhang 001; Jian Peng 001; Jiawei Han 001 (ECML/PKDD (2), 2018)

Learning Dynamic Embeddings from Temporal Interactions. - Srijan Kumar; Xikun Zhang 001; Jure Leskovec (CoRR, 2018)

Predicting Dynamic Embedding Trajectory in Temporal Interaction Networks. - Srijan Kumar; Xikun Zhang 001; Jure Leskovec (KDD, 2019)

Do Language Embeddings capture Scales? - Xikun Zhang 001; Deepak Ramachandran; Ian Tenney; Yanai Elazar; Dan Roth (BlackboxNLP@EMNLP, 2020)

GreaseLM: Graph REASoning Enhanced Language Models. - Xikun Zhang 001; Antoine Bosselut; Michihiro Yasunaga; Hongyu Ren; Percy Liang; Christopher D. Manning; Jure Leskovec (ICLR, 2022)

CLEVRER-Humans: Describing Physical and Causal Events the Human Way. - Jiayuan Mao; Xuelin Yang; Xikun Zhang 001; Noah D. Goodman; Jiajun Wu 001 (NeurIPS, 2022)

Deep Bidirectional Language-Knowledge Graph Pretraining. - Michihiro Yasunaga; Antoine Bosselut; Hongyu Ren; Xikun Zhang 001; Christopher D. Manning; Percy Liang; Jure Leskovec (NeurIPS, 2022)

GreaseLM: Graph REASoning Enhanced Language Models for Question Answering. - Xikun Zhang 001; Antoine Bosselut; Michihiro Yasunaga; Hongyu Ren; Percy Liang; Christopher D. Manning; Jure Leskovec (CoRR, 2022)

How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities. - Charlotte Bunne; Yusuf H. Roohani; Yanay Rosen; Ankit Gupta; Xikun Zhang 001; Marcel Roed; Theo Alexandrov; Mohammed AlQuraishi; Patricia Brennan; Daniel B. Burkhardt; Andrea Califano; Jonah Cool; et al. (CoRR, 2024)

Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop. - Elizabeth Fahsbender; Alma Andersson; Jeremy Ash; Polina Binder; Daniel Burkhardt; Benjamin Chang; Georg K. Gerber; Anthony Gitter; Patrick Godau; Ankit Gupta; Genevieve Haliburton; Siyu He; et al. (CoRR, 2025)