Joint DAC/IWBDA special session design and synthesis of biological circuits. - Douglas Densmore; Mark Horowitz; Smita Krishnaswamy; Xiling Shen; Adam P. Arkin; Erik Winfree; Chris Voigt (DAC, 2011)

Using an adaptive gene network model for self-organizing multicellular behavior. - Yong-Jun Shin; Ali H. Sayed; Xiling Shen (EMBC, 2012)

Post-translational regulation enables robust p53 regulation. - Yong-Jun Shin; Kai-Yuan Chen; Ali H. Sayed; Brandon Hencey; Xiling Shen (BMC Syst. Biol., 2013)

A Bio-inspired spatial patterning circuit. - Kai-Yuan Chen; Daniel Juhyung Joe; James B. Shealy; Bruce R. Land; Xiling Shen (EMBC, 2014)

A metabolic signature of colon cancer initiating cells. - Kai-Yuan Chen; Xiaojing Liu; Pengcheng Bu; Chieh-Sheng Lin; Nikolai Rakhilin; Jason W. Locasale; Xiling Shen (EMBC, 2014)

Comparative Analysis on Technologies Between Chinese and American Large‑Sized Oil Companies Based on Patentometrics. - Zhao Qu; Xiling Shen; Kun Ding (J. Sci. Res., 2014)

Video Recognition of Human Fall Based on Spatiotemporal Features. - Kai Wang 003; Youjin Zhao; Qingyu Xiong; Xiling Shen; Min Fan; Min Gao 001 (Intell. Autom. Soft Comput., 2016)

Single-Cell Transcriptomics Reveals Heterogeneity and Drug Response of Human Colorectal Cancer Organoids. - Kai-Yuan Chen; Tara Srinivasan; Christopher Lin; Kuei-Ling Tung; Ziyang Gao; David S. Hsu; Steven M. Lipkin; Xiling Shen (EMBC, 2018)

Microbiota of Inflammatory Bowel Disease Models. - Ziyang Gao; Kai-Yuan Chen; Olaf Mueller; Han Zhang; Nikolai Rakhilin; Jiande Chen; Xiling Shen (EMBC, 2018)

Spatial Patterning from an Integrated Wnt/β-catenin and Notch/Delta Gene Circuit. - Robert C. Mines; Anders Dohlman; Sze-Xian Lim; Kuei-Ling Tung; Ergang Wang; Xiling Shen (EMBC, 2018)

Slow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts. - Robert C. Mines; Tomasz Lipniacki; Xiling Shen (PLoS Comput. Biol., 2022)

Three-Dimensional Deep-Tissue Functional and Molecular Imaging by Integrated Photoacoustic, Ultrasound, and Angiographic Tomography (PAUSAT). - Mucong Li; Nathan Beaumont; Chenshuo Ma; Juan Rojas 003; Tri Vu; Max Harlacher; Graeme O'Connell; Ryan C. Gessner; Hailey Kilian; Ludmila A. Kasatkina; Yong Chen; Qiang Huang; et al. (IEEE Trans. Medical Imaging, 2022)