A feature extraction method based on noise reduction for circRNA-miRNA interaction prediction combining multi-structure features in the association networks. - Xin-Fei Wang; Changqing Yu; Zhu-Hong You; Li-Ping Li 003; Wenzhun Huang; Zhong-Hao Ren; Yue-Chao Li; Weixiao Meng 001 (Briefings Bioinform., 2023)

An efficient circRNA-miRNA interaction prediction model by combining biological text mining and wavelet diffusion-based sparse network structure embedding. - Xin-Fei Wang; Chang-Qing Yu; Zhu-Hong You; Yan Qiao; Zheng-Wei Li 001; Wenzhun Huang (Comput. Biol. Medicine, 2023)

A multi-task prediction method based on neighborhood structure embedding and signed graph representation learning to infer the relationship between circRNA, miRNA, and cancer. - Lan Huang 002; Xin-Fei Wang; Yan Wang 028; Ren-Chu Guan; Nan Sheng; Xuping Xie; Lei Wang 121; Ziqi Zhao (Briefings Bioinform., 2024)

Multi-view learning framework for predicting unknown types of cancer markers via directed graph neural networks fitting regulatory networks. - Xin-Fei Wang; Lan Huang 002; Yan Wang 028; Ren-Chu Guan; Zhu-Hong You; Nan Sheng; Xuping Xie; Wenju Hou (Briefings Bioinform., 2024)

A multichannel graph neural network based on multisimilarity modality hypergraph contrastive learning for predicting unknown types of cancer biomarkers. - Xin-Fei Wang; Lan Huang 002; Yan Wang 028; Ren-Chu Guan; Zhu-Hong You; Nan Sheng; Xuping Xie; Qixing Yang (Briefings Bioinform., 2024)

RBNE-CMI: An Efficient Method for Predicting circRNA-miRNA Interactions via Multiattribute Incomplete Heterogeneous Network Embedding. - Chang-Qing Yu; Xin-Fei Wang; Li-Ping Li 003; Zhu-Hong You; Zhong-Hao Ren; Peng Chu; Feng Guo; Zhen-Yu Wang (J. Chem. Inf. Model., 2024)

MHESMMR: a multilevel model for predicting the regulation of miRNAs expression by small molecules. - Yongjian Guan; Chang-Qing Yu; Li-Ping Li 003; Zhu-Hong You; Weixiao Meng 001; Xin-Fei Wang; Chen Yang; Lu-Xiang Guo (BMC Bioinform., 2024)

BEROLECMI: a novel prediction method to infer circRNA-miRNA interaction from the role definition of molecular attributes and biological networks. - Xin-Fei Wang; Chang-Qing Yu; Zhu-Hong You; Yan Wang 028; Lan Huang 002; Yan Qiao; Lei Wang 121; Zheng-Wei Li 001 (BMC Bioinform., 2024)

Hither-CMI: Prediction of circRNA-miRNA Interactions Based on a Hybrid Multimodal Network and Higher-Order Neighborhood Information via a Graph Convolutional Network. - Chen Jiang; Lei Wang 232; Chang-Qing Yu; Zhu-Hong You; Xin-Fei Wang; Mengmeng Wei; Tai-Long Shi; Si-Zhe Liang; Dengwu Wang (J. Chem. Inf. Model., 2025)

Noise-Consistent Hypergraph Autoencoder Based on Contrastive Learning for Cancer ceRNA Association Prediction in Complex Biological Regulatory Networks. - Xin-Fei Wang; Lan Huang 002; Yan Wang 028; Ren-Chu Guan; Zhu-Hong You; Fengfeng Zhou; Yuqing Li; Ziqi Zhao (J. Chem. Inf. Model., 2025)