PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq. - Bo Wen; Shaohang Xu; Ruo Zhou; Bing Zhang 003; Xiaojing Wang; Xin Liu 007; Xun Xu; Siqi Liu (BMC Bioinform., 2016)

Improvement of peptide identification with considering the abundance of mRNA and peptide. - Chunwei Ma; Shaohang Xu; Geng Liu; Xin Liu 007; Xun Xu; Bo Wen; Siqi Liu (BMC Bioinform., 2017)

Performance of copy number variants detection based on whole-genome sequencing by DNBSEQ platforms. - Junhua Rao; Lihua Peng; Xinming Liang; Hui Jiang; Chunyu Geng; Xia Zhao; Xin Liu 007; Guangyi Fan; Fang Chen; Feng Mu (BMC Bioinform., 2020)

Accurate haplotype-resolved assembly reveals the origin of structural variants for human trios. - Mengyang Xu; Lidong Guo; Xiao Du; Lei Li; Brock A. Peters; Li Deng; Ou Wang; Fang Chen; Jun Wang 004; Zhesheng Jiang; Jinglin Han; Ming Ni; et al. (Bioinform., 2021)

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme. - Lidong Guo; Mengyang Xu; Wenchao Wang; Shengqiang Gu; Xia Zhao; Fang Chen; Ou Wang; Xun Xu; Inge Seim; Guangyi Fan; Li Deng; Xin Liu 007 (BMC Bioinform., 2021)

Optimally Ordered Orthogonal Neighbor Joining Trees for Hierarchical Cluster Analysis. - Tong Ge; Xu Luo; Yunhai Wang; Michael Sedlmair; Zhanglin Cheng; Ying Zhao 001; Xin Liu 007; Oliver Deussen; Baoquan Chen (IEEE Trans. Vis. Comput. Graph., 2024)