A seven-core photonic crystal fiber with high beam quality. - Huifeng Wei; Gelin Zhang; Peiguang Yan; Jiang Li; Xinben Zhang; Weijun Tong; Jie Luo; Jinyan Li 001; Kangkang Chen (OFC/NFOEC, 2013)

mD3DOCKxb: A Deep Parallel Optimized Software for Molecular Docking with Intel Xeon Phi Coprocessors. - Qian Cheng; Shaoliang Peng; Yutong Lu; Weiliang Zhu; Zhijian Xu; Xinben Zhang (CCGRID, 2015)

D3Pockets: A Method and Web Server for Systematic Analysis of Protein Pocket Dynamics. - Zhaoqiang Chen; Xinben Zhang; Cheng Peng; Jinan Wang; Zhijian Xu; Kaixian Chen; Jiye Shi; Weiliang Zhu (J. Chem. Inf. Model., 2019)

Ligand-based approach for predicting drug targets and for virtual screening against COVID-19. - Yanqing Yang; Zhengdan Zhu; Xiaoyu Wang; Xinben Zhang; Kaijie Mu; Yulong Shi; Cheng Peng; Zhijian Xu; Weiliang Zhu (Briefings Bioinform., 2021)

D3DistalMutation: a Database to Explore the Effect of Distal Mutations on Enzyme Activity. - Xiaoyu Wang; Xinben Zhang; Cheng Peng; Yulong Shi; Huiyu Li; Zhijian Xu; Weiliang Zhu (J. Chem. Inf. Model., 2021)

D3AI-CoV: a deep learning platform for predicting drug targets and for virtual screening against COVID-19. - Yanqing Yang; Deshan Zhou; Xinben Zhang; Yulong Shi; Jiaxin Han; Liping Zhou; Leyun Wu; Minfei Ma; Jintian Li; Shaoliang Peng; Zhijian Xu; Weiliang Zhu (Briefings Bioinform., 2022)

D3PM: a comprehensive database for protein motions ranging from residue to domain. - Cheng Peng; Xinben Zhang; Zhijian Xu; Zhaoqiang Chen; Yanqing Yang; Tingting Cai; Weiliang Zhu (BMC Bioinform., 2022)

D3AI-Spike: A deep learning platform for predicting binding affinity between SARS-CoV-2 spike receptor binding domain with multiple amino acid mutations and human angiotensin-converting enzyme 2. - Jiaxin Han; Tingting Liu; Xinben Zhang; Yanqing Yang; Yulong Shi; Jintian Li; Minfei Ma; Weiliang Zhu; Likun Gong; Zhijian Xu (Comput. Biol. Medicine, 2022)

D3CARP: a comprehensive platform with multiple-conformation based docking, ligand similarity search and deep learning approaches for target prediction and virtual screening. - Yulong Shi; Xinben Zhang; Yanqing Yang; Tingting Cai; Cheng Peng; Leyun Wu; Liping Zhou; Jiaxin Han; Minfei Ma; Weiliang Zhu; Zhijian Xu (Comput. Biol. Medicine, 2023)

D3EGFR: a webserver for deep learning-guided drug sensitivity prediction and drug response information retrieval for EGFR mutation-driven lung cancer. - Yulong Shi; Chongwu Li; Xinben Zhang; Cheng Peng; Peng Sun; Qian Zhang; Leilei Wu; Ying Ding; Dong Xie; Zhijian Xu; Weiliang Zhu (Briefings Bioinform., 2024)

D3Rings: A Fast and Accurate Method for Ring System Identification and Deep Generation of Drug-Like Cyclic Compounds. - Minfei Ma; Xinben Zhang; Liping Zhou; Zijian Han; Yulong Shi; Jintian Li; Leyun Wu; Zhijian Xu; Weiliang Zhu (J. Chem. Inf. Model., 2024)