DOMMINO: a database of macromolecular interactions. - Xingyan Kuang; Jing Ginger Han; Nan Zhao 002; Bin Pang 001; Chi-Ren Shyu; Dmitry Korkin (Nucleic Acids Res., 2012)

PBSword: a web server for searching similar protein-protein binding sites. - Bin Pang 001; Xingyan Kuang; Nan Zhao 002; Dmitry Korkin; Chi-Ren Shyu (Nucleic Acids Res., 2012)

PBSalign: Sequence-independent local alignment of protein binding sites. - Bin Pang 001; David Schlessman; Xingyan Kuang; Nan Zhao 002; Daniel Shyu; Dmitry Korkin; Chi-Ren Shyu (BIBM, 2013)

An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites. - Bin Pang 001; David Schlessman; Xingyan Kuang; Nan Zhao 002; Daniel Shyu; Dmitry Korkin; Chi-Ren Shyu (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. - Xingyan Kuang; Andi Dhroso; Jing Ginger Han; Chi-Ren Shyu; Dmitry Korkin (Database J. Biol. Databases Curation, 2016)