Small RNAs Originated from Pseudogenes: cis- or trans-Acting? - Xingyi Guo; Zhaolei Zhang; Mark B. Gerstein; Deyou Zheng (PLoS Comput. Biol., 2009)

Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation. - Yaomin Xu; Xingyi Guo; Jiayang Sun; Zhongming Zhao (Bioinform., 2015)

iRe2f: Rethinking Effective Refinement in Language Structure Prediction via Efficient Iterative Retrospecting and Reasoning. - Zuchao Li; Xingyi Guo; Letian Peng; Lefei Zhang; Hai Zhao 001 (IJCAI, 2023)