MlyPredCSED: based on extreme point deviation compensated clustering combined with cross-scale convolutional neural networks to predict multiple lysine sites in human. - Yun Zuo 001; Xingze Fang; Jiankang Chen; Jiayi Ji; Yuwen Li; Zeyu Wu; Xiangrong Liu; Xiangxiang Zeng; Zhaohong Deng; Hongwei Yin; Anjing Zhao (Briefings Bioinform., 2024)

PreMLS: The undersampling technique based on ClusterCentroids to predict multiple lysine sites. - Yun Zuo 001; Xingze Fang; Jiayong Wan; Wenying He; Xiangrong Liu; Xiangxiang Zeng; Zhaohong Deng (PLoS Comput. Biol., 2024)

PreAIS: Prediction of A-to-I editing sites based on DNN-CNN deep learning models. - Xingze Fang; Yun Zuo 001; Youxu Tan; Xiangrong Liu; Xiangxiang Zeng; Zhaohong Deng (Comput. Biol. Chem., 2025)

Explainable RNA-Small Molecule Binding Affinity Prediction Based on Multiview Enhancement Learning. - Zeyu Wu; Zhaohong Deng; Qunzhuo Wu; Yun Zuo 001; Xiaoyong Pan; Hongbin Shen; Xingze Fang; Yuxi Ge; Shudong Hu (J. Chem. Inf. Model., 2025)