Expectation pooling: an effective and interpretable pooling method for predicting DNA-protein binding. - Xiao Luo 001; Xinming Tu; Yang Ding; Ge Gao; Minghua Deng (Bioinform., 2020)

Cross-Linked Unified Embedding for cross-modality representation learning. - Xinming Tu; Zhi-Jie Cao; Chenrui Xia; Sara Mostafavi; Ge Gao (NeurIPS, 2022)

A Supervised Contrastive Framework for Learning Disentangled Representations of Cellular Perturbation Data. - Xinming Tu; Jan-Christian Hütter; Zitong Jerry Wang; Takamasa Kudo; Aviv Regev; Romain Lopez (MLCB, 2023)

What Should Data Science Education Do with Large Language Models? - Xinming Tu; James Zou 001; Weijie J. Su; Linjun Zhang (CoRR, 2023)

An Evaluation of Large Language Models in Bioinformatics Research. - Hengchuang Yin; Zhonghui Gu; Fanhao Wang; Yiparemu Abuduhaibaier; Yanqiao Zhu 001; Xinming Tu; Xian-Sheng Hua 001; Xiao Luo 001; Yizhou Sun (CoRR, 2024)